Locus 210

Sequence ID 2R_DroMel_CAF1
Location 1,507,334 – 1,507,424
Length 90
Max. P 0.686348
window475

overview

Window 5

Location 1,507,334 – 1,507,424
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 75.77
Mean single sequence MFE -35.47
Consensus MFE -20.88
Energy contribution -19.72
Covariance contribution -1.16
Combinations/Pair 1.43
Mean z-score -1.53
Structure conservation index 0.59
SVM decision value 0.32
SVM RNA-class probability 0.686348
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1507334 90 - 20766785
GGUGCGGCAAAAAGUAGCUGGCAAAGCUUUUACGCUGCCGCGAGUUUUGGCGUUUUAUCAGAGAUGC------UGCUGCUGCUGCUGUUGCGGUUG
..(((((((...((((((.(((((((((....(((....)))))))))((((((((....)))))))------))))))))))..))))))).... ( -32.30)
>DroPse_CAF1 84729 96 - 1
GGCGGGGCAGGAAGUAGCUGGCAAAGCUUUUGCGUUGCCUCGAAUUCUGUCGCUUCAGCGGUGACGUGGUGGCUGUUGGUGCCGCUGUUGGGGCUC
((((((((........)))(((((.((....)).))))).......)))))(((((((((....)..((((((.......)))))))))))))).. ( -39.90)
>DroSec_CAF1 38586 87 - 1
GGUGCGGCAAAAAGUAGCUGGCAAAGCUUUUACGCUGCCGCGAGUUUUGGCGUUUAAUCGGCGAUGU------UGC---CGCUGCUGUUGCGGUUG
...((.((((..((((((.(((((.(((...((((((.(....)...))))))......)))....)------)))---))))))).)))).)).. ( -30.90)
>DroSim_CAF1 42720 87 - 1
GGUGCGGCAAAAAGUAGCUGGCAAAGCUUUUACGCUGCCGCGAGUUUUGGCGUUUUAUCAGCGGUGU------UGC---CGCUGCUGUUGCGGUUG
...((.((((..((((((.((((((((......)))(((((((..............)).))))).)------)))---))))))).)))).)).. ( -31.44)
>DroAna_CAF1 77550 84 - 1
GGCGGGGCAGAAAGUAACUGGCGAAGCUCUUGCGCUGCCGGGAGUUCUGUCGCUUCAGAGGCGAGGC------UGC---UGCC---GCUGUGGUCG
((((((((((((.....((((((..((....))..))))))...)))))))(((((......)))))------..)---))))---.......... ( -36.80)
>DroPer_CAF1 80463 96 - 1
GGCGGGGCAGGAAGUAGCUGGCAAAGCUUUUGCGUUGCCUCGAAUUCUGUCGCUUCAGCGGUGACGUGGUGGCUGUUGUUGCCGCUGCUGUGGCUG
((((((((........)))(((((.((....)).))))).......)))))(((.(((((....)((((..((....))..)))).)))).))).. ( -41.50)
>consensus
GGCGCGGCAAAAAGUAGCUGGCAAAGCUUUUACGCUGCCGCGAGUUCUGGCGCUUCAGCGGCGAUGU______UGC___UGCCGCUGUUGCGGUUG
..(((((((....((((..(((...))).))))..)))))))........((((.....)))).................(((((....))))).. (-20.88 = -19.72 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:31 2006