| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,153,951 – 1,154,069 |
| Length | 118 |
| Max. P | 0.551871 |
| Location | 1,153,951 – 1,154,069 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.50 |
| Mean single sequence MFE | -27.41 |
| Consensus MFE | -15.57 |
| Energy contribution | -17.36 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1153951 118 - 20766785 -ACGCCUUCUUUGCCAAAAUAAUAACCUCAAUAAGCUGCCGUUUGGAAAGCAUGCUUACCUUUGCUUUGAAAUA-AGCGUGUGAGCACUUUCCCAGUUUCAUCAUACGUUGCUUUAAAAU -...............................((((.((.....((((((..(((((((...(((((......)-)))).)))))))))))))..((........)))).))))...... ( -23.10) >DroSec_CAF1 8256 113 - 1 AACUCCC------GCAAUGGGACAACCUCAAUAAGCUGCCGCUUGGAGAGAAUGCUUACCUUUGCUCUGAAAUA-UUCGUGUGAGCACUUUCCCAGUUGCAUCAUUUGUUGCUCCCAACU .......------....(((((((((..........(((.(((.((((((..((((((((..............-...).))))))))))))).))).)))......)))).)))))... ( -29.82) >DroEre_CAF1 4297 113 - 1 CACUUCC------GCAAUGGGACAACCUCAAUAAGCAGCCCAAUGGAAAGCAUGCUUAACUUUGUCCUGCAAUUGAGCAU-UGAGCACUGACUCAGUUGCAUCAUUCGUUUCUCCCAACU ......(------(.((((((((((......((((((((..........)).))))))...))))))((((((((((((.-.......)).)))))))))).))))))............ ( -29.30) >consensus _ACUCCC______GCAAUGGGACAACCUCAAUAAGCUGCCGAUUGGAAAGCAUGCUUACCUUUGCUCUGAAAUA_AGCGUGUGAGCACUUUCCCAGUUGCAUCAUUCGUUGCUCCCAACU .................(((((((((.......(((((......((((((..(((((((...(((...........))).)))))))))))))))))).........)))).)))))... (-15.57 = -17.36 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:42 2006