Locus 2098

Sequence ID 2R_DroMel_CAF1
Location 7,855,938 – 7,856,058
Length 120
Max. P 0.723038
window3477

overview

Window 7

Location 7,855,938 – 7,856,058
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.39
Mean single sequence MFE -34.50
Consensus MFE -24.03
Energy contribution -24.12
Covariance contribution 0.09
Combinations/Pair 1.42
Mean z-score -1.99
Structure conservation index 0.70
SVM decision value 0.40
SVM RNA-class probability 0.723038
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7855938 120 - 20766785
GAUCUAUCCCACGCAUCCCACGGUGGCUCCAUACCACAAUGAGCCCAUUACGCGACCCAUUAACUUUGCCUACACUGGUAUUGUCAAUGUGCUGGGCUUCCCGGCCACCGCUGUGCCGCU
............((((....((((((((.(((......)))((((((....(((...((((.((..((((......))))..)).)))))))))))))....))))))))..)))).... ( -37.20)
>DroPse_CAF1 13273 120 - 1
GAUCUAUCCCACACACCCCACCGUGGCGCCCUAUCAUAAUGAGCCUGUGACGCGACCCCUUAACUUUGCCUACACGGGCAUUGUGAAUGUUCUGGGCUUCCCAGCCACGGCUGUUCCGUU
..................(((((((((......(((((((..(((((((..((((..........))))...))))))))))))))......((((...))))))))))).))....... ( -37.00)
>DroWil_CAF1 21000 120 - 1
UAUAUAUCCCACGCAUCCCACAGUGGCUCCCUAUCACAACGAGCCGAUUCUACGACCAAUUAAUUUUGCCUAUACUGGAAUUGUAAAUGUUCUUGGCUUUCCGGCAACGGCGGUGCCAUU
.....................((((((.((..........(((((((......((.((.(((......((......)).....))).)).))))))))).(((....))).)).)))))) ( -26.20)
>DroYak_CAF1 13815 120 - 1
CAUCUACCCUACGCAUCCCACGGUGGCUCCAUAUCACAAUGAGCCCAUCACACGACCUAUUAACUUUGCCUACACUGGUAUUGUCAAUGUGCUGGGCUUCCCGGCCACCGCUGUGCCCCU
............((((....((((((((.(((......)))((((((.((((.(((..........((((......))))..)))..)))).))))))....))))))))..)))).... ( -36.80)
>DroAna_CAF1 13714 120 - 1
GAUUUACCCCACGCAUCCGACGGUGGCUCCUUAUCACAACGAGCCGAUAAUGCGGCCCAUUAACUUUUCCUACACCGGUAUUGUUAAUGUUUUGGGUUUCCCGGCCACCGCAGUGCCGCU
............((((..(.((((((((..............((((......)))).(((((((....((......))....)))))))....(((...)))))))))))).)))).... ( -35.20)
>DroPer_CAF1 13312 120 - 1
GAUCUAUCCCACACACCCCACCGUGGCGCCCUAUCAUAAUGAGCCUGUGACGCGACCCCUUAACUUUGCCUACACGGGCAUUGUGAAUGUUCUUGGCUUCCCAGCCACGGCUGUUCCGUU
..................(((((((((......(((((((..(((((((..((((..........))))...)))))))))))))).......(((....)))))))))).))....... ( -34.60)
>consensus
GAUCUAUCCCACGCAUCCCACGGUGGCUCCCUAUCACAAUGAGCCCAUGACGCGACCCAUUAACUUUGCCUACACUGGUAUUGUCAAUGUUCUGGGCUUCCCGGCCACCGCUGUGCCGCU
............((((....((((((((............(((((((.((((.......((.((..((((......))))..)).)))))).)))))))...))))))))..)))).... (-24.03 = -24.12 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:13 2006