Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,852,322 – 7,852,467 |
Length | 145 |
Max. P | 0.998659 |
Location | 7,852,322 – 7,852,441 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -39.37 |
Consensus MFE | -36.64 |
Energy contribution | -36.53 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.52 |
Structure conservation index | 0.93 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7852322 119 + 20766785 UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAACAAACAUUGUCACGGAGUUGGGUAUUUUUUUACACU (((.((....)).)))((((..(((((((.((.((((((((((((....(((((.......))))))))))))((((((.-.....))))))..))))).)).)))).)))..))))... ( -39.40) >DroPse_CAF1 10167 119 + 1 UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGCUGCAAAUAUGCAUUGUCACGGAGUUGGGUUUCCUUUU-UUUU ((((((...........))))))((((((.((.((((((((((((....(((((.......))))))))))))(((((.........)))))..))))).)).))))))......-.... ( -39.20) >DroSec_CAF1 9935 117 + 1 UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAACAAACAUUGUCACGGAAUUGGGCUUU-UUUUAUAC- .((((((((....(((.((((((.(((.....))).)))))))))....(((((.......)))))))))(((((((((.-.....))))))))).........))))..-........- ( -38.00) >DroWil_CAF1 18297 117 + 1 UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGCUG-CAAUAUGCAUUGUCACGGAGCCGGCAGUUUUUUU-UUU- ..((((...((((...(((..(((((..(((((.......))))).(((....)))....)))))..)))((((((((..-......))))))))))))...)))).........-...- ( -40.70) >DroYak_CAF1 9940 118 + 1 UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAACAAACAUUGUCACGGAGUCGGGCUUUCUUUU-UAUU .((((.(((((((...(((..(((((..(((((.......))))).(((....)))....)))))..)))(((((((((.-.....))))))))))))..)))))))).......-.... ( -39.00) >DroAna_CAF1 9819 117 + 1 UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAAUAAACAUUGUCACGGAGUUGGGUUUAUUUUU-UAA- ((((((...........))))))((((((.((.((((((((((((....(((((.......))))))))))))((((((.-.....))))))..))))).)).))))))......-...- ( -39.90) >consensus UAGCCGUGAUCGUCUAGUGGUUAGGACCCCACGUUGUGGCCGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG_AAACAAACAUUGUCACGGAGUUGGGUUUUUUUUU_UAU_ ...(((((((......((((........))))......(((((((....(((((.......))))))))))))((((((.......)))))))))))))..................... (-36.64 = -36.53 + -0.11)
Location | 7,852,322 – 7,852,441 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -36.18 |
Consensus MFE | -33.78 |
Energy contribution | -33.67 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.34 |
Structure conservation index | 0.93 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7852322 119 - 20766785 AGUGUAAAAAAAUACCCAACUCCGUGACAAUGUUUGUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA .((((......))))......((((((...((((((...-.......((((((.(((((.......))))).....))))))......((((........)))))))))).))))))... ( -34.80) >DroPse_CAF1 10167 119 - 1 AAAA-AAAAGGAAACCCAACUCCGUGACAAUGCAUAUUUGCAGCAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA ....-....(((........)))(((....((((....)))).))).((((((((((((.......)))))(((.(((((.......)))))(((....)))....)))..))))))).. ( -38.90) >DroSec_CAF1 9935 117 - 1 -GUAUAAAA-AAAGCCCAAUUCCGUGACAAUGUUUGUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA -........-..((((....((.(((..((((((.....-.))))))((((((.(((((.......))))).....)))))))))...((((........)))).....))....)))). ( -34.60) >DroWil_CAF1 18297 117 - 1 -AAA-AAAAAAACUGCCGGCUCCGUGACAAUGCAUAUUG-CAGCAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA -...-.........((((((...(((....(((.....)-)).))).)))(((((((((.......)))))(((.(((((.......)))))(((....)))....)))..))))))).. ( -38.10) >DroYak_CAF1 9940 118 - 1 AAUA-AAAAGAAAGCCCGACUCCGUGACAAUGUUUGUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA ....-.......((((.(((((((((..((((((.....-.))))))((((((.(((((.......))))).....)))))).....)))))))))(((.....)))........)))). ( -36.30) >DroAna_CAF1 9819 117 - 1 -UUA-AAAAAUAAACCCAACUCCGUGACAAUGUUUAUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA -...-................((((((...((((((...-.......((((((.(((((.......))))).....))))))......((((........)))))))))).))))))... ( -34.40) >consensus _AUA_AAAAAAAAACCCAACUCCGUGACAAUGUUUAUUU_CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACGGCCACAACGUGGGGUCCUAACCACUAGACGAUCACGGCUA ............................((((((.......))))))((((((((((((.......)))))(((.(((((.......)))))(((....)))....)))..))))))).. (-33.78 = -33.67 + -0.11)
Location | 7,852,362 – 7,852,467 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 74.53 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -22.58 |
Energy contribution | -22.98 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.13 |
Mean z-score | -2.43 |
Structure conservation index | 0.79 |
SVM decision value | 2.96 |
SVM RNA-class probability | 0.997895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7852362 105 + 20766785 CGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAACAAACAUUGUCACGGAGUUGGGUAUUUUUUUACACUCUAAUUAUUU-UGAUGAAAAUGA-----A-AAU----- .((((....(((((.......)))))))))(((((((((.-.....)))))))))..(((((...(((......))))))))....((((-(.((....)).)-----)-)))----- ( -28.50) >DroPse_CAF1 10207 98 + 1 CGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGCUGCAAAUAUGCAUUGUCACGGAGUUGGGUUUCCUUUU-UUUUCCUU-----A-AAAUCUUAUUUU-----CC-------- ...((.(((((((.((((......(....)((((((((.........)))))))).)))).))))))).))....-........-----.-............-----..-------- ( -28.10) >DroEre_CAF1 9752 115 + 1 CGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAAUAAACAUUGUCACGGAGUCGGGUUUUCUUUU-UUUUUCUAAGAUUUUGGAUAGUAAUUAUUUAGA-UAUACUAA .((((....(((((.......)))))))))(((((((((.-.....))))))))).(((((((............-.........)))))))..((((((((.....))-).))))). ( -27.60) >DroYak_CAF1 9980 113 + 1 CGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG-AAACAAACAUUGUCACGGAGUCGGGCUUUCUUUU-UAUUACAAUUAUCUAAGAUA--AAUUAUCUAGA-UAUACUUA .(((((((...((((((((.(((.(....)(((((((((.-.....)))))))))..))).)))))))).....)-))))))...((((((.((((--...))))))))-))...... ( -32.70) >DroPer_CAF1 10219 98 + 1 CGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGCUGCAAAUAUGCAUUGUCACGGAGUUGGGUUUUCUUUU-UUUUCCUU-----U-AAAUCUUAUUUU-----CC-------- ...((.(((((((.((((......(....)((((((((.........)))))))).)))).))))))).))....-........-----.-............-----..-------- ( -25.70) >consensus CGUGGUAACCCAGGUUCGAAUCCUGGUCACGGCAAUGUUG_AAAUAAACAUUGUCACGGAGUUGGGUUUUCUUUU_UUUUCCUA__AU_U_AGAUAUUAAUUA_____A__AU_____ ...((.(((((((.((((......(....)(((((((((.......))))))))).)))).))))))).))............................................... (-22.58 = -22.98 + 0.40)
Location | 7,852,362 – 7,852,467 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 74.53 |
Mean single sequence MFE | -21.45 |
Consensus MFE | -18.44 |
Energy contribution | -17.96 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.05 |
Mean z-score | -1.13 |
Structure conservation index | 0.86 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7852362 105 - 20766785 -----AUU-U-----UCAUUUUCAUCA-AAAUAAUUAGAGUGUAAAAAAAUACCCAACUCCGUGACAAUGUUUGUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACG -----...-.-----............-.........(((((((......)))...))))((((.(((((((.....-.)))))))..(((((((((.......))).)))))))))) ( -21.10) >DroPse_CAF1 10207 98 - 1 --------GG-----AAAAUAAGAUUU-U-----AAGGAAAA-AAAAGGAAACCCAACUCCGUGACAAUGCAUAUUUGCAGCAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACG --------..-----............-.-----..(((...-....(....).....)))(((.((((((.........))))))..(((((((((.......))).))))))))). ( -21.70) >DroEre_CAF1 9752 115 - 1 UUAGUAUA-UCUAAAUAAUUACUAUCCAAAAUCUUAGAAAAA-AAAAGAAAACCCGACUCCGUGACAAUGUUUAUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACG .(((((..-..........))))).......((((.......-..))))...........((((.(((((((.....-.)))))))..(((((((((.......))).)))))))))) ( -20.40) >DroYak_CAF1 9980 113 - 1 UAAGUAUA-UCUAGAUAAUU--UAUCUUAGAUAAUUGUAAUA-AAAAGAAAGCCCGACUCCGUGACAAUGUUUGUUU-CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACG ......((-((((((((...--)))).)))))).........-.................((((.(((((((.....-.)))))))..(((((((((.......))).)))))))))) ( -24.40) >DroPer_CAF1 10219 98 - 1 --------GG-----AAAAUAAGAUUU-A-----AAGGAAAA-AAAAGAAAACCCAACUCCGUGACAAUGCAUAUUUGCAGCAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACG --------..-----............-.-----..(((...-...............)))(((.((((((.........))))))..(((((((((.......))).))))))))). ( -19.67) >consensus _____AU__U_____UAAUUAAGAUCU_A_AU__UAGGAAAA_AAAAGAAAACCCAACUCCGUGACAAUGUUUAUUU_CAACAUUGCCGUGACCAGGAUUCGAACCUGGGUUACCACG ............................................................((((.((((((.........))))))..(((((((((.......))).)))))))))) (-18.44 = -17.96 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:09 2006