Locus 2095

Sequence ID 2R_DroMel_CAF1
Location 7,851,725 – 7,851,842
Length 117
Max. P 0.532523
window3469

overview

Window 9

Location 7,851,725 – 7,851,842
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.66
Mean single sequence MFE -42.70
Consensus MFE -29.32
Energy contribution -30.47
Covariance contribution 1.14
Combinations/Pair 1.30
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value -0.00
SVM RNA-class probability 0.532523
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7851725 117 - 20766785
GGUGGCCAGCAGGAAGUUGCAGCGAACCCGCUCGUUGGCGAUGCGCUUGAUGAGCUCCUGCAUCUCAUCGCUCUGAACCAAACUUCUGAUGGCCACGCUCACCUUGUCCUGG---GCGAC
.(((((((...(((((((.((((((......))))))((((((.....((((........)))).)))))).........)))))))..)))))))(((((........)))---))... ( -46.00)
>DroSec_CAF1 9310 117 - 1
GGUGGCCAGCAAGAAGUUGCAGCGAACCCGCUCGUUGGCGAUGCGCUUGAUGAGCUCCUGCAUCUCAUCGCUCUGAACAAAACUUCUAAUGGCCACGCUCACCGUGUCCUCG---GCGAC
.(((((((...(((((((.((((((......))))))((((((.....((((........)))).)))))).........)))))))..)))))))..((.(((......))---).)). ( -43.90)
>DroSim_CAF1 9771 117 - 1
GGUGGCCAGCAAGAAGUUGCAGCGAACCCGCUCGUUGGCGAUGCGCUUGAUGAGCUCCUGCAUCUCAUCGCUCUGAACAAAAUUUCUGAUGGCCACGCUCGCCGUGUCCUCG---GCGAC
.(((((((...(((((((.((((((......))))))((((((.....((((........)))).)))))).........)))))))..)))))))..((((((......))---)))). ( -48.10)
>DroEre_CAF1 9063 117 - 1
GGUGGCCAGCAGGAAGUUGCAACGGACCCGUUCGUUGGCGAUUCGCUUGAUGAGCUCCUGCAUCUCUUCGCUCCGUACCAGAUUUCUGAUGGCCACGUUCACCUUGUCCUGG---GCGAC
.(((((((((((((((((((((((((....)))))).)))))).((((...)))))))))).................(((....))).)))))))..((.(((......))---).)). ( -43.60)
>DroYak_CAF1 9256 117 - 1
AGUGGCCAGCAGGAAGUUGCAGCGAACCCGUUCGUUGGCGAUUCGCUUUAUGAGCUCCUGCAUCUCUUCGCUCUGUACCAGAUUUCUGAUGGCCACGCUCACCUUGUCCUGG---GCGAC
.(((((((((((((((((((((((((....)))))).)))))).((((...)))))))))).................(((....))).)))))))(((((........)))---))... ( -46.20)
>DroAna_CAF1 9307 120 - 1
GGUAGCCAGGAGAAAAUUGCAGCGCACUCGCUCAUUGGCAAUGAUUUUGAUGAGGUCCUGCAUUUCGUUGCUGUUAACAAAAUCGGUGAAGAACUGAUUCGUUUUUUCUUUUGACGAGAU
....(.((((((((((..((((((((..(.(((((..(........)..))))))...))).....))))).........(((((((.....)))))))....)))))))))).)..... ( -28.40)
>consensus
GGUGGCCAGCAGGAAGUUGCAGCGAACCCGCUCGUUGGCGAUGCGCUUGAUGAGCUCCUGCAUCUCAUCGCUCUGAACAAAAUUUCUGAUGGCCACGCUCACCUUGUCCUGG___GCGAC
.(((((((...(((((((.((((((......))))))((((((.....((((........)))).)))))).........)))))))..)))))))........................ (-29.32 = -30.47 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:05 2006