Locus 2090

Sequence ID 2R_DroMel_CAF1
Location 7,844,017 – 7,844,119
Length 102
Max. P 0.556720
window3458

overview

Window 8

Location 7,844,017 – 7,844,119
Length 102
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.81
Mean single sequence MFE -22.05
Consensus MFE -14.64
Energy contribution -14.70
Covariance contribution 0.06
Combinations/Pair 1.33
Mean z-score -1.29
Structure conservation index 0.66
SVM decision value 0.05
SVM RNA-class probability 0.556720
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7844017 102 + 20766785
UCUGACCUAACUCUUUCCUUUCCCU---ACAGCUUCUCAGCUCAGAGCGGCUUAGCAUCUUUGCCGCCGAUUUGCAGCUCUGUUUUUUGCUUUUCGAGUCUCUCC
.........((((............---..((((....))))(((((((((..((...))..)))((......)).)))))).............))))...... ( -21.20)
>DroSec_CAF1 1442 102 + 1
UCUAAACUAACUCUUGCCUUUCCUU---ACAGCUUCUCAGCUCGGAGCGGCUUAGCAUCUUUGCCGCCAAUUUGCAGCUCUGUUUUUUGCUAUUCGAGUCUCUGC
.........((((..(((.((((..---..((((....)))).)))).))).(((((.(...((.((......)).))...).....)))))...))))...... ( -21.80)
>DroSim_CAF1 1444 102 + 1
UCUAAACUAACUCUUGCCUUUCCCU---ACAGCUUCUCAGCUCGGAGCGGCUUAGCAUCUUUGCCGCCAAUUUGCAGCUCUGUUUUUUGCUAUUCGAGUCUCUGC
.........((((..(((.((((..---..((((....)))).)))).))).(((((.(...((.((......)).))...).....)))))...))))...... ( -21.80)
>DroEre_CAF1 1440 102 + 1
CCGGAACAAACCCUUGCCUUUUCUU---ACAGCUUCUCAGCUCGGAGCGGCUUAGCAUCUUUGCUGCCGAUCUGCAACUCUGCUUUUUGCUCUUCGAGUCUCUUC
..((.......))............---...........((((((((((((..((((....))))))))....(((....)))........))))))))...... ( -22.30)
>DroYak_CAF1 1443 102 + 1
GCGGAACCAACCCUUGCUUUUCCUU---GCAGCUCCUCAGUUCGGAGCGGCUUAGCAUUUUUGCUGCCGACCUGCAGCUCUGCUUUUUGCUCUUUGAAAGUCUCC
(((((.........((((.......---((.(((((.......))))).))..)))).....(((((......))))))))))...................... ( -27.30)
>DroAna_CAF1 1442 96 + 1
AUUA---------AUGUUUUUCCUUUAAACAGCUCCUCAGCUCCGAGCGUUUGAGUAUCUUUGCGGCCGACUUGCAGCUGUGUUUCCUGCUCUUUGAGUCCCUGC
....---------..........(((((((.((((.........))))))))))).......((((..(((((((((.........)))).....))))).)))) ( -17.90)
>consensus
UCUAAACUAACUCUUGCCUUUCCUU___ACAGCUUCUCAGCUCGGAGCGGCUUAGCAUCUUUGCCGCCGAUUUGCAGCUCUGUUUUUUGCUCUUCGAGUCUCUGC
.......................................((((((((((((...(((....))).))).....(((....))).....))))..)))))...... (-14.64 = -14.70 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:55 2006