Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,842,991 – 7,843,104 |
Length | 113 |
Max. P | 0.544623 |
Location | 7,842,991 – 7,843,104 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -32.74 |
Consensus MFE | -19.22 |
Energy contribution | -20.70 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.35 |
Mean z-score | -1.47 |
Structure conservation index | 0.59 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7842991 113 + 20766785 AUC-------CACAGAUCCCACGUCUCCAAAUCUGGCUGACAUUGUGGAGCGCAUUGCCGAUGCUGUGACACAUGCCCGCUUUAUGGGCACCGAUCAGUCCUCGGAUGGUGUCACCUUUA .((-------(((((....)..(((.(((....)))..)))..))))))..(((((...))))).(((((((.((((((.....))))))((((.......))))...)))))))..... ( -38.50) >DroVir_CAF1 27241 120 + 1 GUUUCUGCAAUUUAGAUCCCACAACACCAAAUCUGGCUGUGAUUGUAGAGAAGAUUGCGUAUGCUGUCACGCACGCCCGAUUUAUGGGCACCGAUCAGUCUUCGGAUAGUGUGACAUUUA .(((((((((((...........((((((....))).)))))))))))))).....((....))((((((((..(((((.....))))).((((.......))))...)))))))).... ( -37.80) >DroGri_CAF1 17672 120 + 1 AUUUUUAACCUUCAGAUCCCACGACUCCAAAUCUUGCUGUGAUUGUCGAGAUGAUUGCGGAUGCUGUGACGCACGCCCGCUUUAUGGGAACGGAUCAGUCAUCGGAUAGUGUAACAUUUA ...............((((..((((....((((.......)))))))).(((((((((((.(((......)))...))))....((....))....)))))))))))............. ( -25.40) >DroWil_CAF1 6804 113 + 1 AUU-------UACAGAUCCCACUACACCAAAUCUUCCGGUAAUUGUCGAACUAAUUGCCGAUGCUGUGACCCAUGCCCGCUUUAUGGGCACAGAUCAGUCCUCGGAUAGCGUGACAUUUA ..(-------(((..((((....((............((((((((......))))))))(((.(((((.((((((.......)))))))))))))).))....))))...))))...... ( -31.00) >DroMoj_CAF1 12382 112 + 1 --------AAUUUAGAUCCUACAACCCCAAAUCUGGCUGUAAUUGUAGAGAUGAUUGCAGAUGCAGUUACACAUGCCCGUUUUAUGGGCACCGAUCAGUCGUCUGACAGUGUAACAUUUA --------.......(((((((((..(((....)))......)))))).)))...(((....)))(((((((.(((((((...)))))))..(.((((....))))).)))))))..... ( -31.70) >DroAna_CAF1 401 116 + 1 AUUUC----UUUUAGAUCCCACCACUCCGAACCUCUCGGAUAUUGUGGAGCGCAUUGCCGACGCCGUUACCCAUGCCCGUUUCAUGGGCACAGAUCAGUCCUCGGACAGUGUAACCUUUA .....----.........((((...(((((.....)))))....))))...((((((((((.(.(........(((((((...))))))).......).).)))).))))))........ ( -32.06) >consensus AUU_______UUCAGAUCCCACAACUCCAAAUCUGGCUGUAAUUGUAGAGAUGAUUGCCGAUGCUGUGACACAUGCCCGCUUUAUGGGCACCGAUCAGUCCUCGGAUAGUGUAACAUUUA ....................................((((((((........)))))))).....(((((((..(((((.....)))))........(((....))).)))))))..... (-19.22 = -20.70 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:54 2006