Locus 2088

Sequence ID 2R_DroMel_CAF1
Location 7,837,313 – 7,837,416
Length 103
Max. P 0.640692
window3456

overview

Window 6

Location 7,837,313 – 7,837,416
Length 103
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 76.66
Mean single sequence MFE -33.42
Consensus MFE -20.17
Energy contribution -20.65
Covariance contribution 0.48
Combinations/Pair 1.39
Mean z-score -1.46
Structure conservation index 0.60
SVM decision value 0.22
SVM RNA-class probability 0.640692
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7837313 103 + 20766785
GUCCCUUGACCGUUUACUGGAGUUUGGCGCAGCACCAAAAGCCGGUGGGUGGAAGCCCAGGAGACAGUAGAACGAGGGAUACACGGAGUCUAAAGGCA--AGUGU
((((((((.(((..((((((..(((((.......)))))..))))))..))).......(....).......))))))))((((...(((....))).--.)))) ( -39.50)
>DroSec_CAF1 4092 103 + 1
GCCCCUUUUCCGUCCACUGGAGUUUGGCGCAGCAUCAAAAGCCGGUGGGUGGAAGCCCAGGAGAAAGUAGAACGAGGGAUACCCGGAGUCUGAAGGCA--AAUGU
(((((((((((..(((((((..(((((.......)))))..)))))))..)))))...)))......((((.((.((....))))...))))..))).--..... ( -38.30)
>DroSim_CAF1 5238 103 + 1
GCCCCUUUUCCGUCCACUGGAGUUUGGCGCAGCAUCAAAAGCCGGUGGGUGGAAGCCCAGGAGAAAGUAGAACGAGGGAUACCCGGAGUCUGAAGGCA--AGUGU
(((((((((((..(((((((..(((((.......)))))..)))))))..)))))...)))......((((.((.((....))))...))))..))).--..... ( -38.30)
>DroEre_CAF1 5230 103 + 1
GCCCUUUGUCCAUCCACUGGAGCUUGUCCCAGAAUCAAAAGCCGGUGGGUGGAAGCCCAGGAGAAAGUAGAACAAGAGACACCCGGAGUCCGAAGGCG--AGUGU
(((.((((((((((((((((...(((.........)))...)))))))))))).((((.((....................)).)).)).))))))).--..... ( -30.65)
>DroYak_CAF1 5387 103 + 1
GUCCUUUGUCCAUCCACUGGAAUUUGGCCCAGAAUCAAAAGCCGGUGGGUGGAAGCCCAGGAGAAAGUAGAACCAGAGACACCCGGAGUCCGAAGGCA--AGUGU
(.((((((((((((((((((..(((((.......)))))..)))))))))))).((((.((....................)).)).)).))))))).--..... ( -33.05)
>DroPer_CAF1 4496 98 + 1
GUAAUUUAUCACUUUAUUGGCAUUUGGCACAAUCACAAAGGACGG---CUGGAGCUCCAGGAACAGGAAAAA----AGUCAGGUGGUGACCAAAAACCAAAAAAU
................((((..((((((((...(((....(((.(---(....))(((.......)))....----.)))..)))))).)))))..))))..... ( -20.70)
>consensus
GCCCCUUGUCCGUCCACUGGAGUUUGGCGCAGCAUCAAAAGCCGGUGGGUGGAAGCCCAGGAGAAAGUAGAACGAGAGACACCCGGAGUCCGAAGGCA__AGUGU
(((.....((((((((((((..(((((.......)))))..))))))))))))........................(((.......)))....)))........ (-20.17 = -20.65 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:53 2006