Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,829,425 – 7,829,545 |
Length | 120 |
Max. P | 0.666577 |
Location | 7,829,425 – 7,829,545 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -28.02 |
Energy contribution | -28.47 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.98 |
Structure conservation index | 0.89 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7829425 120 - 20766785 ACCGGUUGAUCAUAACUUCUUCCUCUUGAUAAGUCAUAGGACCUGUCUUCUGGUUGGACAUAGCUUCUACCUGUCGAUAAGUCAUAGGACCUAUCUUCUGGUUGAUCAUAGGAUCCACCU ...(((.((((......((..((....((((.(((....(((.((((..(.(((.(((......))).))).)..)))).)))....))).))))....))..))......)))).))). ( -32.10) >DroSec_CAF1 42 120 - 1 CCCGGUUGAUCAUAACUUUUUCCUCUUGAUAAGCCAUAGGACCUGUCUUCUGGUUGGUCAUAGCUUCUACCCGUCGAUAAGUCAUAGGACCAAUCUUCUGGUUGAUCAUAGGAUCCACCU ...(((.((((...............((((.(((((.((((....)))).))))).)))).....((.(((.(..(((..(((....)))..)))..).))).))......)))).))). ( -29.50) >DroSim_CAF1 16904 120 - 1 CCCGGUUGAUCAUAACUUUUUCCUCUUGAUAAGUCAUAGGACCUGUCUUCUGGUUGGUCAUAGCUUCUACCCGUAGAUAAGUCAUAGGACCUAUCUUCUGGUUGAUCAUAGGAUCCACCU ...(((.((((......((..((....((((.(((....(((.(((((.(.(((.(((....)))...))).).))))).)))....))).))))....))..))......)))).))). ( -32.70) >consensus CCCGGUUGAUCAUAACUUUUUCCUCUUGAUAAGUCAUAGGACCUGUCUUCUGGUUGGUCAUAGCUUCUACCCGUCGAUAAGUCAUAGGACCUAUCUUCUGGUUGAUCAUAGGAUCCACCU ...(((.((((......((..((....((((.(((....(((.((((..(.(((.((......))...))).)..)))).)))....))).))))....))..))......)))).))). (-28.02 = -28.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:52 2006