Locus 2086

Sequence ID 2R_DroMel_CAF1
Location 7,824,709 – 7,824,804
Length 95
Max. P 0.989047
window3454

overview

Window 4

Location 7,824,709 – 7,824,804
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 85.68
Mean single sequence MFE -28.74
Consensus MFE -29.03
Energy contribution -28.03
Covariance contribution -1.00
Combinations/Pair 1.40
Mean z-score -1.83
Structure conservation index 1.01
SVM decision value 2.15
SVM RNA-class probability 0.989047
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7824709 95 - 20766785
UAUAUAUGUCGUCUUAAUUACCGAAGCCAAUGCAGGGUUCUUGAACUCUCGGAUUCUGUAUUGCUUGCCGGGACCGCACUUUGUGGUGCAUUCAU
....................(((((((.((((((((((((..(....)..))))))))))))))))..)))....(((((....)))))...... ( -27.80)
>DroSec_CAF1 1243 95 - 1
UAUAUAUGUCGUCUUAAUUACCGAAGCCAGUGCAGGGUUCUUGAACUCUCGGAUCCUGUACUGCUUGCCGGGACCGCACUUUGUGGUGCACUCAU
....................(((((((.((((((((((((..(....)..))))))))))))))))..)))....(((((....)))))...... ( -32.90)
>DroSim_CAF1 1243 95 - 1
UAUAUAUGUCGUCUUAAUUACCGAAGCCAGUGCAGGGUUCUUGAACUCUCGAAUCCUGUACUGCUUGCCGGGACCGCACUUUGUGGUGCAUUCAU
....................(((((((.((((((((((((..(....)..))))))))))))))))..)))....(((((....)))))...... ( -33.40)
>DroEre_CAF1 1272 95 - 1
UCUAUAUGACGCCUUAAUUACCGAAGCCAGUGCUGGGUUCUUGAACUCCCGGAUUCUGUACUGCUUGCCGGGACCGCACUUUGUGGUGCACUCAU
.....((((.((........(((((((.(((((.((((((..(....)..)))))).)))))))))..))).(((((.....)))))))..)))) ( -25.70)
>DroYak_CAF1 1256 95 - 1
UCUAUAUUACGCUUUAAUUACCGAGGCCAGUGCUGGGUUCUUGAACUCUCGGAUCCUGUACUGCUUGCCGGGACCGCACUUUGUGGUGCAUUCAU
..........((........((..(((((((((.((((((..(....)..)))))).))))))...))).))(((((.....)))))))...... ( -30.30)
>DroAna_CAF1 1247 94 - 1
GGCUUAAAACC-UCUACUCACCGAAGCCAGCACGGGAUUUUUGAAUUCACGAGUUCUAUACUGCUUUCCGGGUCCGCACUUGGUAGUGCACUCAU
(((((......-...........)))))((((.(((((((.((....)).)))))))....))))....((((..(((((....))))))))).. ( -22.33)
>consensus
UAUAUAUGACGUCUUAAUUACCGAAGCCAGUGCAGGGUUCUUGAACUCUCGGAUCCUGUACUGCUUGCCGGGACCGCACUUUGUGGUGCACUCAU
....................(((((((.((((((((((((..(....)..))))))))))))))))..)))....(((((....)))))...... (-29.03 = -28.03 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:51 2006