Locus 2085

Sequence ID 2R_DroMel_CAF1
Location 7,819,025 – 7,819,121
Length 96
Max. P 0.805215
window3453

overview

Window 3

Location 7,819,025 – 7,819,121
Length 96
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -24.05
Consensus MFE -14.53
Energy contribution -14.20
Covariance contribution -0.33
Combinations/Pair 1.18
Mean z-score -2.00
Structure conservation index 0.60
SVM decision value 0.63
SVM RNA-class probability 0.805215
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7819025 96 - 20766785
AGUUUCUGCAAGAGCCCAAUCUGCAAGAGCCCAAUCUGCAGGAACCCAAUCUGCAGGAGCCCAAUCUGCAAGACGACACUCUGCAGGAACCCAAUC
.(((((((((.(((.....((((((.((......((((((((.......)))))))).......))))).))).....))))))))))))...... ( -30.32)
>DroSec_CAF1 70441 81 - 1
AGUUUCUGCAAGAGCCCAAUC---------------UGCAGGACGCCAAUUUGCAAGACGCCAAUCUGCAAGACGCCAAACAGCAGGAGCCCAACC
.((((((((.(((......))---------------)...((.((....((((((.((......)))))))).)))).....))))))))...... ( -20.20)
>DroSim_CAF1 74753 81 - 1
GGUUUCUGCAAGAGCCCAAUC---------------UGCAGGACGCCAAUUUGCAAGACGCCAAUCUGCAAGACGCCAAAAAGCAGGAGGCCAACC
((((((((((.((......))---------------))))))).)))............(((..(((((.............))))).)))..... ( -21.62)
>consensus
AGUUUCUGCAAGAGCCCAAUC_______________UGCAGGACGCCAAUUUGCAAGACGCCAAUCUGCAAGACGCCAAACAGCAGGAGCCCAACC
.((((((((...........................((((((.......))))))(((......)))...............))))))))...... (-14.53 = -14.20 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:49 2006