Locus 2081

Sequence ID	2R_DroMel_CAF1
Location	7,806,971 – 7,807,085
Length	114
Max. P	0.995415

overview

Window 6

Location	7,806,971 – 7,807,085
Length	114
Sequences	5
Columns	114
Reading direction	forward
Mean pairwise identity	90.25
Mean single sequence MFE	-38.68
Consensus MFE	-32.88
Energy contribution	-32.92
Covariance contribution	0.04
Combinations/Pair	1.14
Mean z-score	-2.33
Structure conservation index	0.85
SVM decision value	2.57
SVM RNA-class probability	0.995415
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7806971 114 + 20766785
CUGUGUCCUCUGUGCGUCCGGGUUUUUCGCUUCUGGCCACCUGAAACCAGUCGAAACUGGUUGGUCAGUCGGUCAAGAGCCACGAAUGUGGGCCAAAUAAAAAUGCAAAAUAGA
.(((((......((.(((((.((((...(((..(((((..(((((((((((....)))))))..))))..)))))..)))...)))).))))))).......)))))....... ( -38.92)
>DroSec_CAF1 57942 114 + 1
GUGUGUCCUGUGUGCGUCCGUGUUAAUCGCUUCUGGCCAACUGAAACCAGUCUAAACUGGUUGGUCAGUCGGCCAAGAGCCACGAAUGUGGGCCAAAUAAAAAUGCAAAAUAUA
.(((((..(((.((.(((((..((....(((..(((((.((((((((((((....)))))))..))))).)))))..)))....))..))))))).)))...)))))....... ( -43.70)
>DroSim_CAF1 60522 114 + 1
CUGUGUCCUGUGUGCGUCCGUGUUAAUCGCUUCUGGCCAACUGAAACCAGUCGAAACUGGUUGGUGAGUCGGCCAAGAGCCGCGAAUGUGGGCCAAAUAAAAAUGCAAAAUAUA
.(((((..(((.((.(((((..((....(((..(((((.(((..(((((((....)))))))....))).)))))..)))....))..))))))).)))...)))))....... ( -39.60)
>DroEre_CAF1 62214 113 + 1
CUGUGUCCUGUGUGCGUCGUGGUU-UUUGCUUUUGCCCACCUGAAACCAGUCGAAACUGGUUGGUCAGUCGGCCAAGAGCCACAAAUGUGGGCCAAAUAAAAAUGCAAAAUAUA
.(((((..(((((......(((((-...(((((((.((..(((((((((((....)))))))..))))..)).)))))))(((....)))))))).......)))))..))))) ( -35.12)
>DroYak_CAF1 61826 112 + 1
CUGUGUCCUGUGUACGCUCGGGUU-UUCGCUUCUGGCCACUUGAAACCAGUCGAAACUGGUUGGUCAGUGGGCCAAGAGCCACAAAUGUGGGCCAAAUGAAAAUGCAAAAGA-A
.(((((.........(((((.(((-(..(((..((((((((...(((((((....)))))))....))).)))))..)))...)))).))))).........))))).....-. ( -36.07)
>consensus
CUGUGUCCUGUGUGCGUCCGGGUU_UUCGCUUCUGGCCACCUGAAACCAGUCGAAACUGGUUGGUCAGUCGGCCAAGAGCCACGAAUGUGGGCCAAAUAAAAAUGCAAAAUAUA
.(((((....(((..(((((.(((....(((..(((((..(((((((((((....)))))))..))))..)))))..)))....))).)))))...)))...)))))....... (-32.88 = -32.92 +   0.04)

alignment

secondary structure

dotplot

Window 7

Location	7,806,971 – 7,807,085
Length	114
Sequences	5
Columns	114
Reading direction	reverse
Mean pairwise identity	90.25
Mean single sequence MFE	-33.56
Consensus MFE	-27.54
Energy contribution	-28.42
Covariance contribution	0.88
Combinations/Pair	1.07
Mean z-score	-1.58
Structure conservation index	0.82
SVM decision value	0.59
SVM RNA-class probability	0.792202
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7806971 114 - 20766785
UCUAUUUUGCAUUUUUAUUUGGCCCACAUUCGUGGCUCUUGACCGACUGACCAACCAGUUUCGACUGGUUUCAGGUGGCCAGAAGCGAAAAACCCGGACGCACAGAGGACACAG
(((.((.(((.......(((((((.((..(((.(........))))((((..(((((((....))))))))))))))))))))..((.......))...))).)).)))..... ( -29.90)
>DroSec_CAF1 57942 114 - 1
UAUAUUUUGCAUUUUUAUUUGGCCCACAUUCGUGGCUCUUGGCCGACUGACCAACCAGUUUAGACUGGUUUCAGUUGGCCAGAAGCGAUUAACACGGACGCACACAGGACACAC
.......(((.........((.....))(((((((((..(((((((((((..(((((((....))))))))))))))))))..)))......)))))).)))............ ( -39.80)
>DroSim_CAF1 60522 114 - 1
UAUAUUUUGCAUUUUUAUUUGGCCCACAUUCGCGGCUCUUGGCCGACUCACCAACCAGUUUCGACUGGUUUCAGUUGGCCAGAAGCGAUUAACACGGACGCACACAGGACACAG
.......(((...........((........)).(((..(((((((((....(((((((....)))))))..)))))))))..))).............)))............ ( -32.20)
>DroEre_CAF1 62214 113 - 1
UAUAUUUUGCAUUUUUAUUUGGCCCACAUUUGUGGCUCUUGGCCGACUGACCAACCAGUUUCGACUGGUUUCAGGUGGGCAAAAGCAAA-AACCACGACGCACACAGGACACAG
....((((((.((((......((((((.....((((.....)))).((((..(((((((....))))))))))))))))))))))))))-)....................... ( -33.40)
>DroYak_CAF1 61826 112 - 1
U-UCUUUUGCAUUUUCAUUUGGCCCACAUUUGUGGCUCUUGGCCCACUGACCAACCAGUUUCGACUGGUUUCAAGUGGCCAGAAGCGAA-AACCCGAGCGUACACAGGACACAG
.-((((.((.((.(((........(((....)))(((..(((((.(((....(((((((....)))))))...))))))))..)))...-.....))).)).)).))))..... ( -32.50)
>consensus
UAUAUUUUGCAUUUUUAUUUGGCCCACAUUCGUGGCUCUUGGCCGACUGACCAACCAGUUUCGACUGGUUUCAGGUGGCCAGAAGCGAA_AACCCGGACGCACACAGGACACAG
.......(((..............(((....)))(((.(((((((.((((..(((((((....))))))))))).))))))).))).............)))............ (-27.54 = -28.42 +   0.88)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:44 2006