Locus 2080

Sequence ID 2R_DroMel_CAF1
Location 7,803,885 – 7,803,997
Length 112
Max. P 0.944058
window3445

overview

Window 5

Location 7,803,885 – 7,803,997
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 92.06
Mean single sequence MFE -30.65
Consensus MFE -24.60
Energy contribution -24.72
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -2.03
Structure conservation index 0.80
SVM decision value 1.34
SVM RNA-class probability 0.944058
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7803885 112 + 20766785
UUAUCAUUUAUCUGGACUGACAGCUCGGACACAUGAUGGCUGGCUGGCUGUUCGGAGUGGAGUCGGAAUUUUAGAAGAAGUUGUCAUGUGAUUGUUAGUCACGAAAUAAAUU
.....((((((.(((((((((((......(((((((..(((..((((..((((.((......)).)))).))))....)))..))))))).))))))))).))..)))))). ( -32.50)
>DroSec_CAF1 54907 108 + 1
UUAUCAUUUAUCUGGACUGACAGCUCGGACACAUGAUGGCU----GGCUGUUCGGAGUGGAGUCGGAAUUUUUGAAGAAGUUGUCAUGUGAUUGUUAGUCACAAAAUAAAUU
.....((((((.(((((((((((......(((((((..(((----..(.((((.((......)).))))....)....)))..))))))).))))))))).))..)))))). ( -29.80)
>DroSim_CAF1 57500 108 + 1
UUAUCAUUUAUCUGGACUGACAGCUCGGACACAUGAUGGCU----GGCUGUUCGUAGUGGAGUCGGAAUUUUUGAAGAAGUUGUCAUGUGAUUGUUAGUCACAAAAUAAAUU
.....((((((.(((((((((((......(((((((..(((----..((((((......))).)))............)))..))))))).))))))))).))..)))))). ( -27.64)
>DroEre_CAF1 59150 108 + 1
UUAUCUUUUAUCUGGACUGACAACUCGGACUCAUGAUGGCU----GGCUGUUCGCAGCGGAGUAGGAAUUUUUCAAGAAGUUGUCAUGUGAUUGUUAGUCAUCAAACAAAUU
..............(((((((((.(((....(((((..(((----.((((....))))((((........))))....)))..)))))))))))))))))............ ( -30.40)
>DroYak_CAF1 58820 108 + 1
UUAUCAUUUAUCUGGACUGACAGCUCGGACACAUGAUGGCU----GGCUGUUCGCAGCGGAGUAGAAAUUUUCAAAGAAGUUGUCAUGUGAUUGUUAGUCAUAAAAUAAAUA
.....((((((.(.(((((((((......(((((((..(((----.((((....))))((((.......)))).....)))..))))))).)))))))))...).)))))). ( -32.90)
>consensus
UUAUCAUUUAUCUGGACUGACAGCUCGGACACAUGAUGGCU____GGCUGUUCGCAGUGGAGUCGGAAUUUUUGAAGAAGUUGUCAUGUGAUUGUUAGUCACAAAAUAAAUU
..............(((((((((......(((((((..(((.....((((....))))(((((....)))))......)))..))))))).)))))))))............ (-24.60 = -24.72 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:42 2006