Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,501,047 – 1,501,143 |
Length | 96 |
Max. P | 0.997871 |
Location | 1,501,047 – 1,501,143 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.31 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -23.90 |
Energy contribution | -23.70 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.93 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1501047 96 + 20766785 GUUUACUAUGUGCUAAAAUGCACAACUGGCUUGCCAAACGGGUGAUACAUUUUUGUAAGUGCUAAAGCGCUCAGUUCCGUGCACAUGAACUUUCUU ......(((((((.............(((....))).((((((((((((....)))).((((....)))))))..))))))))))))......... ( -24.20) >DroSec_CAF1 32223 96 + 1 GUUUACUAUGUGCUAAAAUGCACAACUGGCUUGCCAAACGGGUGAUACAUUUUUGUAAGCGCUAAAGCGCUCAGUUCCGUGCACAUGAACUUUCUU ......(((((((.............(((....))).((((((((((((....)))).((((....)))))))..))))))))))))......... ( -26.10) >DroSim_CAF1 36288 96 + 1 GUUUACUAUGUGCUAAAAUGCACAACUGGCUUGCCAAACGGGUGAUACAUUUUUGUAAGCGCUAAAGCGCUCAGUUCCGUGCACAUGAACUUUCUU ......(((((((.............(((....))).((((((((((((....)))).((((....)))))))..))))))))))))......... ( -26.10) >DroEre_CAF1 40317 95 + 1 GUUUGCUAUGUGCUAAAAUGCACAACUGGCUUGCCAAACGGGUGAUACAUUUUUGUAAGUGCUG-AGCGCUCAGUUCCGUGCACAUGAACUUUCUU (((((((((((((......)))))..))))(..((.....))..)((((....)))).((((.(-(((.....))))...))))..))))...... ( -25.50) >DroYak_CAF1 55292 96 + 1 GUUUGCUAUGUGCUAAAAUGCACAACUGGCUUACAAAACGGGUGAUACAUUUUUGUAAGUGCUGGAGCACUCUAUUCCGUGCACAUGAACUUUCUU (((((((((((((......)))))..))))((((((((..(......)..))))))))(((((((((.......))))).))))..))))...... ( -26.00) >consensus GUUUACUAUGUGCUAAAAUGCACAACUGGCUUGCCAAACGGGUGAUACAUUUUUGUAAGUGCUAAAGCGCUCAGUUCCGUGCACAUGAACUUUCUU ......(((((((.............(((....))).(((((...((((....))))(((((....)))))....))))))))))))......... (-23.90 = -23.70 + -0.20)
Location | 1,501,047 – 1,501,143 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.31 |
Mean single sequence MFE | -25.70 |
Consensus MFE | -23.32 |
Energy contribution | -23.76 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.08 |
Structure conservation index | 0.91 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1501047 96 - 20766785 AAGAAAGUUCAUGUGCACGGAACUGAGCGCUUUAGCACUUACAAAAAUGUAUCACCCGUUUGGCAAGCCAGUUGUGCAUUUUAGCACAUAGUAAAC ..........((((((.......((((.((....)).))))..(((((((((.((.....(((....))))).))))))))).))))))....... ( -22.60) >DroSec_CAF1 32223 96 - 1 AAGAAAGUUCAUGUGCACGGAACUGAGCGCUUUAGCGCUUACAAAAAUGUAUCACCCGUUUGGCAAGCCAGUUGUGCAUUUUAGCACAUAGUAAAC ..........((((((.......(((((((....)))))))..(((((((((.((.....(((....))))).))))))))).))))))....... ( -28.00) >DroSim_CAF1 36288 96 - 1 AAGAAAGUUCAUGUGCACGGAACUGAGCGCUUUAGCGCUUACAAAAAUGUAUCACCCGUUUGGCAAGCCAGUUGUGCAUUUUAGCACAUAGUAAAC ..........((((((.......(((((((....)))))))..(((((((((.((.....(((....))))).))))))))).))))))....... ( -28.00) >DroEre_CAF1 40317 95 - 1 AAGAAAGUUCAUGUGCACGGAACUGAGCGCU-CAGCACUUACAAAAAUGUAUCACCCGUUUGGCAAGCCAGUUGUGCAUUUUAGCACAUAGCAAAC ......(((.((((((......((((....)-)))........(((((((((.((.....(((....))))).))))))))).))))))))).... ( -23.30) >DroYak_CAF1 55292 96 - 1 AAGAAAGUUCAUGUGCACGGAAUAGAGUGCUCCAGCACUUACAAAAAUGUAUCACCCGUUUUGUAAGCCAGUUGUGCAUUUUAGCACAUAGCAAAC ......(((.((((((........((((((....))))))...(((((((((.((..(((.....)))..)).))))))))).))))))))).... ( -26.60) >consensus AAGAAAGUUCAUGUGCACGGAACUGAGCGCUUUAGCACUUACAAAAAUGUAUCACCCGUUUGGCAAGCCAGUUGUGCAUUUUAGCACAUAGUAAAC ..........((((((.......(((((((....)))))))..(((((((((.((..(((.....)))..)).))))))))).))))))....... (-23.32 = -23.76 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:29 2006