Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,802,043 – 7,802,157 |
Length | 114 |
Max. P | 0.611227 |
Location | 7,802,043 – 7,802,157 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.77 |
Mean single sequence MFE | -37.35 |
Consensus MFE | -21.69 |
Energy contribution | -21.58 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.24 |
Mean z-score | -1.76 |
Structure conservation index | 0.58 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7802043 114 - 20766785 AUUCGUUGAGUUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGGAUUCUUUCGCAAUCGAGAACUGUUGGCUCAAAGUCCAUAUUUAGCUGGAAUUUGU .((((((((((..((((((((((((((.((((((....)))))).)))))(((((.((((.....)).)).)))))......)))))).))).....))))))).)))...... ( -32.90) >DroVir_CAF1 56129 114 - 1 GCUCGUGCAGCUGCCGGAGCCAGUGCAUCAACUGGGCCAAUUUGCUGCGUGCCGUAUUCGUGCGCUCACAGUUGAGAAUACUUGGCUCAAACUCGAAGCUGACAUCCAAUUUGG ....((((((((..(((((((((((..((((((((((......)))(((..(.......)..)))...)))))))...))).)))))).....)).))))).)))......... ( -39.30) >DroSec_CAF1 53139 114 - 1 AUUCGUUGAGGUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGCGUCCUUUCGCAAUCGAGAACGGUUGGCUCAAAGUCCAUAUUUAGCUGGAAUUUGU .((((((((((...(((((((((((((.((((((....)))))).)))))(((((.((((......)))).)))))......))))))))...))....))))).)))...... ( -37.30) >DroSim_CAF1 55642 114 - 1 AUUCGUUGAGCUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGCGUUCUUUCGCAAUCGAGAACGGUUGGCUCAAAGUCCAUAUUUAGCUGGAAUUUGU ..............(((((((((((((.((((((....)))))).)))))(((((.((((......)))).)))))......))))))))..((((........))))...... ( -36.10) >DroYak_CAF1 56893 114 - 1 AUUCGUUGAGCUUUUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGGUGCGCUUCGUAUUGGUUCUUUCGCAAUCCAGAACAGUUGGCUCAAAGUCCAUACUCAGCUGGAAUUUAU .(((((((((..((((((((((((((((((((((....))))))))))))...((.((((............)))).))...))))))))))......)))))).)))...... ( -39.20) >DroMoj_CAF1 68447 114 - 1 UCUCGUGCAGCUUCCGCAGCCAGUGCAUCAACUGGGCCAAUUUGCUGCGCGCCGUGUUCGUGCGCUCGCAGUUGAGUAUACUUGGCUCAAACUCGAAGCUGAGAUCUAAUUUGC ..((...(((((((...(((((((((.((((((((((......)))((((((.......))))))...)))))))))))...))))).......))))))).)).......... ( -39.30) >consensus AUUCGUUGAGCUUCUUGAGCCAGUGCAUCAGGUUGGCCAAUUUGUUGCGCUUCGGAUGCGUUCUUUCGCAAUCGAGAACAGUUGGCUCAAAGUCCAUACUUAGCUGGAAUUUGU ................(((((((((((.((((((....)))))).))))).............(((((....))))).....))))))(((.((((........)))).))).. (-21.69 = -21.58 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:41 2006