Locus 2078

Sequence ID 2R_DroMel_CAF1
Location 7,800,257 – 7,800,354
Length 97
Max. P 0.601497
window3443

overview

Window 3

Location 7,800,257 – 7,800,354
Length 97
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 83.38
Mean single sequence MFE -26.78
Consensus MFE -16.48
Energy contribution -17.36
Covariance contribution 0.88
Combinations/Pair 1.17
Mean z-score -1.94
Structure conservation index 0.62
SVM decision value 0.14
SVM RNA-class probability 0.601497
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7800257 97 + 20766785
UUGGCCCAAGAUAUUUUCCCUUUUACCGUGUAACCCAAAAACUUACUGGCUUCAAUGAGUUUUGAGCCAAGCCGGAAAAUGUCUUGAAAUU------------GUGUCA
......(((((((((((((..........((((.........))))(((((.(((......))))))))....))))))))))))).....------------...... ( -25.30)
>DroSec_CAF1 51364 97 + 1
UUGGCCCAAGAUAUUUUCCCUUUUACCGAGUAAGCCAAAAACUUACGGCCUUCAAUGAGUUUUGAGCCAAGCCGGAAAAUGUCUUGAAAUU------------GUGUCA
......(((((((((((((..........(((((.......)))))(((..((((......))))))).....))))))))))))).....------------...... ( -27.40)
>DroSim_CAF1 53446 97 + 1
UUGGCCCAAGAUAUUUUCCCUUUUACCGAGUAACCCAAAAACUUACGGGCUUCAAUGAGUUUUGAGCCAAGCCGGAAAAUGUCUUGAAAUU------------GUGUCA
......(((((((((((((........((((.........))))...((((.(((......))))))).....))))))))))))).....------------...... ( -25.30)
>DroEre_CAF1 55683 108 + 1
UUGGC-CAAGAUUGUUUCCAUUCAACCGACUAACCCGAAAAUUUAGGGGCUUCGAUGAGUUUAAAGCGGAGCCGGAAAAUGUCUUGAAAUUGUGCCUGAAAUUGUGUCA
..(((-((((((..(((((...............((.........))(((((((.(........).))))))))))))..)))))).......)))............. ( -25.71)
>DroYak_CAF1 55088 108 + 1
UUGGC-UAACAUAGUUUCAAUUUUACCGACUAACCCGAAAACUUACGGGCUUCAAUGAGUUUUGAGCCAAGUCGGAAAAUGUCUUGAAAUUGUGCCUGAAAUGGUGUCA
.((((-...(((((((((((((((.((((((....((........))((((.(((......))))))).)))))))))))....))))))))))((......)).)))) ( -30.20)
>consensus
UUGGCCCAAGAUAUUUUCCCUUUUACCGAGUAACCCAAAAACUUACGGGCUUCAAUGAGUUUUGAGCCAAGCCGGAAAAUGUCUUGAAAUU____________GUGUCA
......(((((((((((((..........((((.........)))).(((((.((.....)).))))).....)))))))))))))....................... (-16.48 = -17.36 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:40 2006