Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,798,277 – 7,798,371 |
Length | 94 |
Max. P | 0.864493 |
Location | 7,798,277 – 7,798,371 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 80.40 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -16.39 |
Energy contribution | -16.17 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -2.25 |
Structure conservation index | 0.62 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7798277 94 + 20766785 AAAGCGCUUUUCUCUCUCUCUCUUGACAGCCAACACUGCGUAUGAUUUAUGCAGCGUU-UCCAGGAGCUGUUGCAUAUGCAUGAGCAGCAU-UUGU ...((((((...............((((((((((.(((((((.....))))))).)))-.....).))))))((....))..)))).))..-.... ( -24.40) >DroPse_CAF1 53078 81 + 1 AAA-C-----------GUUCGCUCCGCGUGCAACGCUGCGUAUGAUUUAUGCAGCGUU-U-CAGAAGCUGUUGCAUAUGCAUGAGCAUCAU-UUGU ...-.-----------....((((.(((((((((((((((((.....))))))))(((-.-....))).)))))))..))..)))).....-.... ( -28.90) >DroSec_CAF1 49411 89 + 1 CAACCGCUUC------GCUCUCUCGACGGGCAACACUGCGUAUGAUUUAUGCAGCGUUUUCCAGGAGCUGUUGCAUAUGCAUGAGCAGCAU-UUGC .(((.(((((------((((.......))))(((.(((((((.....))))))).))).....))))).)))(((.((((.......))))-.))) ( -30.10) >DroEre_CAF1 53795 89 + 1 AGAACGCUUCA------CUUUCUCGACGGCCAACACUGCGUAUGAUUUAUGCAGCGUU-UCCAGGAGCUGUUGCAUAUGCAUGAGCUGCAUUUUGC ..((((((((.------(......)..((..(((.(((((((.....))))))).)))-.)).))))).)))(((.(((((.....)))))..))) ( -24.70) >DroAna_CAF1 46058 83 + 1 AAAAU-----------AUUCUCUCAGCGGCCAACACUGCGUAUGAUUUAUGCAGCGUU-UUCAGAAGCUGUUGCAUAUGCAUGAGAAGAAU-UUGU .....-----------((((((((.((((......))))..(((...(((((((((((-(....)))).))))))))..)))))).)))))-.... ( -24.00) >DroPer_CAF1 53503 81 + 1 AAA-C-----------GUUCGCUCCGCGUGCAACGCUGCGUAUGAUUUAUGCAGCGUU-U-CAGAAGCUGUUGCAUAUGCAUGAACAUCAU-UUGU ...-.-----------(((((...((..((((((((((((((.....))))))))(((-.-....))).))))))..))..))))).....-.... ( -26.90) >consensus AAA_C___________GCUCUCUCGACGGCCAACACUGCGUAUGAUUUAUGCAGCGUU_UCCAGAAGCUGUUGCAUAUGCAUGAGCAGCAU_UUGU .................................((.((((((((......(((((...........)))))..))))))))))............. (-16.39 = -16.17 + -0.22)
Location | 7,798,277 – 7,798,371 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.40 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -14.54 |
Energy contribution | -14.35 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -2.53 |
Structure conservation index | 0.55 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7798277 94 - 20766785 ACAA-AUGCUGCUCAUGCAUAUGCAACAGCUCCUGGA-AACGCUGCAUAAAUCAUACGCAGUGUUGGCUGUCAAGAGAGAGAGAGAAAAGCGCUUU ....-..(((.(((.(((....)))((((((......-((((((((...........))))))))))))))...........)))...)))..... ( -26.00) >DroPse_CAF1 53078 81 - 1 ACAA-AUGAUGCUCAUGCAUAUGCAACAGCUUCUG-A-AACGCUGCAUAAAUCAUACGCAGCGUUGCACGCGGAGCGAAC-----------G-UUU ..((-(((.(((((.(((...(((..(((...)))-.-((((((((...........))))))))))).))))))))..)-----------)-))) ( -24.80) >DroSec_CAF1 49411 89 - 1 GCAA-AUGCUGCUCAUGCAUAUGCAACAGCUCCUGGAAAACGCUGCAUAAAUCAUACGCAGUGUUGCCCGUCGAGAGAGC------GAAGCGGUUG ....-..(((((((.(((....)))...((((((.((.((((((((...........)))))))).....)).)).))))------).)))))).. ( -30.70) >DroEre_CAF1 53795 89 - 1 GCAAAAUGCAGCUCAUGCAUAUGCAACAGCUCCUGGA-AACGCUGCAUAAAUCAUACGCAGUGUUGGCCGUCGAGAAAG------UGAAGCGUUCU ((...(((((.....)))))...((....(((.(((.-((((((((...........))))))))..)))..)))....------))..))..... ( -24.50) >DroAna_CAF1 46058 83 - 1 ACAA-AUUCUUCUCAUGCAUAUGCAACAGCUUCUGAA-AACGCUGCAUAAAUCAUACGCAGUGUUGGCCGCUGAGAGAAU-----------AUUUU ....-....(((((.(((....))).((((....(..-((((((((...........))))))))..).)))).))))).-----------..... ( -23.30) >DroPer_CAF1 53503 81 - 1 ACAA-AUGAUGUUCAUGCAUAUGCAACAGCUUCUG-A-AACGCUGCAUAAAUCAUACGCAGCGUUGCACGCGGAGCGAAC-----------G-UUU ....-..(((((((.(((....)))...(((((((-.-((((((((...........))))))))...)).)))))))))-----------)-)). ( -28.10) >consensus ACAA_AUGCUGCUCAUGCAUAUGCAACAGCUCCUGGA_AACGCUGCAUAAAUCAUACGCAGUGUUGCCCGCCGAGAGAAC___________G_UUU ...........(((.(((....))).............((((((((...........)))))))).......)))..................... (-14.54 = -14.35 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:36 2006