Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,778,973 – 7,779,071 |
Length | 98 |
Max. P | 0.988376 |
Location | 7,778,973 – 7,779,071 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 96.60 |
Mean single sequence MFE | -31.03 |
Consensus MFE | -30.52 |
Energy contribution | -30.63 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.67 |
Structure conservation index | 0.98 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7778973 98 + 20766785 UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCAUUUGAAGACAGGAGGGCUUCAAUUUGCUUUUCAACAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU ...((((((..((((.....((((((....))))))..))))(.((..((((((((((........))))))))))..)).)......)))))).... ( -25.70) >DroSec_CAF1 30818 98 + 1 UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCGUUUGAAGAGAGGAGGGCUUCAAUCUGCUUUUUAGCAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU ((((((((......)))..)))))...((((..((((((.(.(((...((((((((((((....)))))))))))).))).).))))))..))))... ( -33.70) >DroSim_CAF1 32194 98 + 1 UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCGUUUGAAGAGAGGAGGGCUUCAAUCUGCUUUUUAGCAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU ((((((((......)))..)))))...((((..((((((.(.(((...((((((((((((....)))))))))))).))).).))))))..))))... ( -33.70) >consensus UUUGCUCAUGUUGUUGAUUGCAAAUGUCGCCGUUUGAAGAGAGGAGGGCUUCAAUCUGCUUUUUAGCAGAUUGGGGAUCUGCAUUUCGAUGGGUGUUU ((((((((......)))..)))))...((((..((((((...(((...((((((((((((....)))))))))))).)))...))))))..))))... (-30.52 = -30.63 + 0.11)
Location | 7,778,973 – 7,779,071 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 96.60 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -19.91 |
Energy contribution | -20.03 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -3.06 |
Structure conservation index | 0.97 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7778973 98 - 20766785 AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGUUGAAAAGCAAAUUGAAGCCCUCCUGUCUUCAAAUGGCGACAUUUGCAAUCAACAACAUGAGCAAA ...............(((((((.....))))(((((...((((((.(..(((....((....))...)))..)))))))..))))).......))).. ( -18.60) >DroSec_CAF1 30818 98 - 1 AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGCUAAAAAGCAGAUUGAAGCCCUCCUCUCUUCAAACGGCGACAUUUGCAAUCAACAACAUGAGCAAA ...............(((((((...(((((((((....)))))))))..(((...............)))...))))))).................. ( -21.56) >DroSim_CAF1 32194 98 - 1 AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGCUAAAAAGCAGAUUGAAGCCCUCCUCUCUUCAAACGGCGACAUUUGCAAUCAACAACAUGAGCAAA ...............(((((((...(((((((((....)))))))))..(((...............)))...))))))).................. ( -21.56) >consensus AAACACCCAUCGAAAUGCAGAUCCCCAAUCUGCUAAAAAGCAGAUUGAAGCCCUCCUCUCUUCAAACGGCGACAUUUGCAAUCAACAACAUGAGCAAA ...............(((((((...(((((((((....)))))))))..(((...............)))...))))))).................. (-19.91 = -20.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:34 2006