| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,773,710 – 7,773,824 |
| Length | 114 |
| Max. P | 0.969688 |
| Location | 7,773,710 – 7,773,824 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -29.96 |
| Energy contribution | -29.63 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.969688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7773710 114 + 20766785 UCUGGAAUACCAAGUGCGAAUGCUGGAGGCAGCCUCGUUGCAGACCAACAUGAGGGUCAAUGCUCUGGAGCAUGUGGUAAUUAUAAUUA--A----UUCAUAUGAUCCAUAUGUUAUCAU ..((((.(((((.((((.....(..((((((((...))))).((((........))))....)))..).)))).))))).(((((....--.----....)))))))))........... ( -31.70) >DroEre_CAF1 29627 108 + 1 CCUCGAAUACCAAGUGCGCAUGCUGGAGGCGGCCUCGCUGCAGACCAACAUGAGGGUCAAUGCCCUGGAGCAUGUGGUAAGUAAAAUUA--ACAUAU-AAUAUGA---UAUACC------ .......(((((.((((.((((.(((..(((((...)))))...))).))))(((((....)))))...)))).)))))..........--......-.......---......------ ( -32.50) >DroYak_CAF1 27717 111 + 1 CCUGGAAUACCAAGUGCGCAUGCUGGAGGCGGCCUCGCUGCAGACCAACAUGAGGGUCAAUGCCCUGGAGCAUGUGGUAACUAUAAUUAUAACAAAUUUAUGUGG---GGAUCU------ (((....(((((.((((.((((.(((..(((((...)))))...))).))))(((((....)))))...)))).)))))............(((......)))))---).....------ ( -34.70) >consensus CCUGGAAUACCAAGUGCGCAUGCUGGAGGCGGCCUCGCUGCAGACCAACAUGAGGGUCAAUGCCCUGGAGCAUGUGGUAACUAUAAUUA__ACA_AUUAAUAUGA___AAAUCU______ .......(((((.((((.((((.(((..(((((...)))))...))).))))(((((....)))))...)))).)))))......................................... (-29.96 = -29.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:31 2006