Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,766,761 – 7,766,858 |
Length | 97 |
Max. P | 0.527808 |
Location | 7,766,761 – 7,766,858 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 85.35 |
Mean single sequence MFE | -19.13 |
Consensus MFE | -12.45 |
Energy contribution | -12.57 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.26 |
Mean z-score | -1.83 |
Structure conservation index | 0.65 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7766761 97 - 20766785 CCUAAAUGGGGGCCGUUGCAGAAAUGCCAAAGUAAUUACAUACUUAAUACAUACAAAUAAUAUCCAAUUACAGGCAUUUUUGUAUUAGCUAUUAAGU (((....)))(((...((((((((((((.(((((......)))))............((((.....))))..))))))))))))...)))....... ( -22.60) >DroSec_CAF1 18766 97 - 1 CUUAAAUGGGGGCCGUGACAGAAUUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAAAAUAUCCAAUUACAGACAUUUUUGUAUUAGCUAUUAAGA (((((.....(((.((......)).)))............((((((((((.....((((((.((........)).))))))))))))))))))))). ( -17.00) >DroSim_CAF1 19957 97 - 1 CUUAAAUGGAGGCCGUGACAGAAUUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAAAAUAUCCAAUUACAGACAUUUUUGUAUUAGCUAUUAAGA (((((.....(((.((......)).)))............((((((((((.....((((((.((........)).))))))))))))))))))))). ( -17.20) >DroEre_CAF1 21958 96 - 1 CCUAUC-GGAGGUCGUGGCAGAAAUGCUAAAGUAAUUACGUAUUUAAUACUUAUAAAUAGUAUCCAAUUACAAGCAUUUUUGCAUUAGCUUUUAAGA ....(.-.(((((....(((((((((((...((((((((.((((((.......)))))))))....))))).)))))))))))....)))))..).. ( -22.80) >DroYak_CAF1 20215 96 - 1 CUUAUA-GCGACCCGUAGCAGCAAUGCGAAAGUAAUUACGUAUUUAAUACUUACAAAUAAUAUCCAAUUACAAGCAUUUUUGCAUUGGCUUUCAAGA ......-..((.(((..((((.(((((....((((((..(((((..............)))))..))))))..))))).))))..)))...)).... ( -16.04) >consensus CUUAAAUGGGGGCCGUGGCAGAAAUGCCAAAGUAAUUACAUAGUUAAUACUUACAAAUAAUAUCCAAUUACAGGCAUUUUUGUAUUAGCUAUUAAGA ..........(((....(((((((((((...((((((..(((..................)))..)))))).)))))))))))....)))....... (-12.45 = -12.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:29 2006