Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,496,718 – 1,496,821 |
Length | 103 |
Max. P | 0.998577 |
Location | 1,496,718 – 1,496,821 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 72.59 |
Mean single sequence MFE | -33.03 |
Consensus MFE | -16.11 |
Energy contribution | -18.34 |
Covariance contribution | 2.23 |
Combinations/Pair | 1.17 |
Mean z-score | -4.80 |
Structure conservation index | 0.49 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1496718 103 + 20766785 CUAGGGAGUCCA-----GCCCAAAGCAAACUUUAUAGUCUACCUAGCGUCCACAUGCUUAACGCCUUUUGUAAAUGGAGUUUUGUUAAGCUCCAUUUCCGUUCCAAAA ...((((.....-----((...(((((.......(((.....))).........)))))...)).....(.(((((((((((....))))))))))).).)))).... ( -21.19) >DroSec_CAF1 28016 105 + 1 CUAGAAA-UCCAUGGACGUCCAUAGCAAACUCUAUAGUCUGCGUAGCGUCCACAUGCUUAACGCA--AUGGAAAUGGAGUUUUGUUUAGCUCCAUUUCUGUUCUAAAA .(((((.-....(((((((.....(((.(((....))).)))...)))))))..(((.....)))--..((((((((((((......)))))))))))).)))))... ( -35.50) >DroSim_CAF1 32076 87 + 1 CUAGAAA-ACCAUGGACUUCCACAUGGAA------------------GUCCACAUGGUUAACGCA--AUGGAAAUGGAGUUUUGUUAAGCUCCAUUUCCGUUCCAAAA ......(-(((((((((((((....))))------------------)))))..)))))...(.(--(((((((((((((((....)))))))))))))))).).... ( -42.40) >consensus CUAGAAA_UCCAUGGACGUCCAAAGCAAACU_UAUAGUCU_C_UAGCGUCCACAUGCUUAACGCA__AUGGAAAUGGAGUUUUGUUAAGCUCCAUUUCCGUUCCAAAA ...(((......(((((((..........................))))))).................(((((((((((((....))))))))))))).)))..... (-16.11 = -18.34 + 2.23)
Location | 1,496,718 – 1,496,821 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 72.59 |
Mean single sequence MFE | -32.97 |
Consensus MFE | -14.30 |
Energy contribution | -19.13 |
Covariance contribution | 4.84 |
Combinations/Pair | 1.07 |
Mean z-score | -3.74 |
Structure conservation index | 0.43 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1496718 103 - 20766785 UUUUGGAACGGAAAUGGAGCUUAACAAAACUCCAUUUACAAAAGGCGUUAAGCAUGUGGACGCUAGGUAGACUAUAAAGUUUGCUUUGGGC-----UGGACUCCCUAG ....(((.(((((((((((.((....)).)))))))).((((.((((((.........))))))..(((((((....)))))))))))..)-----))...))).... ( -25.90) >DroSec_CAF1 28016 105 - 1 UUUUAGAACAGAAAUGGAGCUAAACAAAACUCCAUUUCCAU--UGCGUUAAGCAUGUGGACGCUACGCAGACUAUAGAGUUUGCUAUGGACGUCCAUGGA-UUUCUAG ...(((((..(((((((((..........)))))))))...--(((.....))).((((((((((.(((((((....)))))))..))).)))))))...-.))))). ( -35.90) >DroSim_CAF1 32076 87 - 1 UUUUGGAACGGAAAUGGAGCUUAACAAAACUCCAUUUCCAU--UGCGUUAACCAUGUGGAC------------------UUCCAUGUGGAAGUCCAUGGU-UUUCUAG ...(((((.((((((((((.((....)).))))))))))..--......(((((..(((((------------------((((....)))))))))))))-)))))). ( -37.10) >consensus UUUUGGAACGGAAAUGGAGCUUAACAAAACUCCAUUUCCAU__UGCGUUAAGCAUGUGGACGCUA_G_AGACUAUA_AGUUUGCUAUGGACGUCCAUGGA_UUUCUAG ...(((((.((((((((((..........))))))))))................(((((((....(((((((....)))))))......))))))).....))))). (-14.30 = -19.13 + 4.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:27 2006