Locus 2068

Sequence ID 2R_DroMel_CAF1
Location 7,764,049 – 7,764,140
Length 91
Max. P 0.999561
window3427

overview

Window 7

Location 7,764,049 – 7,764,140
Length 91
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 62.14
Mean single sequence MFE -25.23
Consensus MFE -15.77
Energy contribution -18.55
Covariance contribution 2.78
Combinations/Pair 1.18
Mean z-score -1.85
Structure conservation index 0.62
SVM decision value 3.72
SVM RNA-class probability 0.999561
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7764049 91 - 20766785
AAGUCACCCACCAGCCCCACCAGCUGAGC-UGAGCUUCACUCCAUUACAGCCACCCAGAAUA-AGCAGGCGGCCACCCAAACCAUCCA-----CGCAC
...........((((.......)))).((-.(((.....))).......(((.((.......-....)).)))...............-----.)).. ( -12.90)
>DroPse_CAF1 20032 84 - 1
AAC--AC-------UGUUC-GAGGGGAGUGGGAGCUGGAGUGGAUACCAGGCCCUCCGACGACACCA----UCCACUCCAUCGACCCAUUCAUCCCAC
...--..-------.....-..((((((((((.(.((((((((((....((...((....))..)))----))))))))).)..)))))))..))).. ( -31.40)
>DroPer_CAF1 19396 84 - 1
AAC--AC-------UGUUC-GAGGGGAGUGGGAGCUGGAGUGGAUACCAGGCCCUCCGACGACACCA----UCCACUCCAUCGACCCAUUCAUCCCAC
...--..-------.....-..((((((((((.(.((((((((((....((...((....))..)))----))))))))).)..)))))))..))).. ( -31.40)
>consensus
AAC__AC_______UGUUC_GAGGGGAGUGGGAGCUGGAGUGGAUACCAGGCCCUCCGACGACACCA____UCCACUCCAUCGACCCAUUCAUCCCAC
......................((((((((((.(.(((((((((.....((.............)).....))))))))).)..)))))))..))).. (-15.77 = -18.55 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:25 2006