| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,759,481 – 7,759,577 |
| Length | 96 |
| Max. P | 0.595658 |
| Location | 7,759,481 – 7,759,577 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 94.98 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -19.16 |
| Energy contribution | -19.24 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.595658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7759481 96 + 20766785 CGAGUGUUCACUGUGCCAUUCUAAUUGCAUCCGCAGGCGUUUGCCAUUCACAUCCGCACUACGCCAAAAA--AGGAAAAUGGCGAAAAAUUGCAAACU .(..(((......(((((((((...(((....)))(((((.(((...........)))..))))).....--.)))..)))))).......)))..). ( -22.32) >DroSec_CAF1 11396 94 + 1 CGAGUGUUCACUGUUCCAUUCUAAUUGCAUCCGCAGGCGUUCGCCAUUCACAUCCGCACUACGC--AAAA--GGGAAAAUGGCGAAAAAUUGCAAACU .(((((..........)))))...........((((...(((((((((....(((((.....))--....--.))).)))))))))...))))..... ( -22.20) >DroSim_CAF1 12259 94 + 1 CGAGUGUUCACUGUGCCAUUCUAAUUGCAUCCGCAGGCGUUCGCCAUUCACAUCCGCACUACGC--AAAA--AGGAAAAUGGCGAAAAAUUGCAAACU .(((((..........)))))...........((((...(((((((((....(((.........--....--.))).)))))))))...))))..... ( -22.24) >DroEre_CAF1 14968 94 + 1 AGAGUGUUCACUGUGCCAUUCUAAUUGCAUCCGCAGGCGUUCGCCAUUCACAUCCGCACAACGC--AAAA--AAGAAAAUGGCGAAAAAUUGCAAACU ((((((..........))))))..........((((...(((((((((.......((.....))--....--.....)))))))))...))))..... ( -21.29) >DroYak_CAF1 13460 96 + 1 AGAGUGUUCACUGUGCCAUUCUAAUUGCAUCCGCAGGCGUUCGCCAUUCACAUCCGCACUACGC--AAAAAAAAGGAAAUGGCGAAAAAUUGCAAACU ((((((..........))))))..........((((...(((((((((....(((.........--........))))))))))))...))))..... ( -22.93) >consensus CGAGUGUUCACUGUGCCAUUCUAAUUGCAUCCGCAGGCGUUCGCCAUUCACAUCCGCACUACGC__AAAA__AGGAAAAUGGCGAAAAAUUGCAAACU .(((((..........)))))...........((((...(((((((((....(((((.....)).........))).)))))))))...))))..... (-19.16 = -19.24 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:24 2006