| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,757,796 – 7,757,892 |
| Length | 96 |
| Max. P | 0.548494 |
| Location | 7,757,796 – 7,757,892 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -14.59 |
| Energy contribution | -14.71 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7757796 96 + 20766785 UCUUCUUGCCACUGAUAUUUCAUGAUGAUUAUGAGUUGAAAUUUAUUGGCUAUUUGUUAAGUUAACAUUUUAAAUAAAUUGACAGAUAGCUCGAA-----------------G .((((...(.(((.(((..((.....)).))).))).).........(((((((((((((.((((....)))).....))))))))))))).)))-----------------) ( -19.30) >DroSec_CAF1 9711 113 + 1 UAUUCUUGCCACUGAUAUUUCAUGAUGAUUAUGAAUUGGAAUUUAUUGGCUAUUUGUUAAGUUAACAUUUUAAAUAAAUUGACCAAUACCACGAGUUAUUCAUAUAUCGUCUG ............(((....))).((((((((((((((((....(((((((.(((((((.((........)).))))))).).)))))))))......))))))).)))))).. ( -19.80) >DroSim_CAF1 10457 113 + 1 UAUUCUUGCCACUGAUAUUUCAUGAUGAUAAUGAAUUGAAAUUUAUCGGCUAUUUGUUAAGUUAACAUUUUGAAUAAAUUGACAGAUAGCUCGAAUUAUUUACAUAUCAUCAG ............(((....)))((((((((.((.....((((...(((((((((((((((.((((....)))).....)))))))))))).)))...)))).)))))))))). ( -25.50) >consensus UAUUCUUGCCACUGAUAUUUCAUGAUGAUUAUGAAUUGAAAUUUAUUGGCUAUUUGUUAAGUUAACAUUUUAAAUAAAUUGACAGAUAGCUCGAAUUAUU_A_AUAUC_UC_G .((((..((((.(((.((((((..............))))))))).))))((((((((((.((((....)))).....))))))))))....))))................. (-14.59 = -14.71 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:21 2006