Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,746,570 – 7,746,689 |
Length | 119 |
Max. P | 0.980597 |
Location | 7,746,570 – 7,746,689 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 71.10 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -22.53 |
Energy contribution | -23.87 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.14 |
Mean z-score | -1.76 |
Structure conservation index | 0.63 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7746570 119 + 20766785 CCCAACCCCAAUAUAGGUACAUAUGCACUAUUUGGACCCAUUCAGAGGCUCUGGAGCCAGAGCAAUUUGCCGCUUUUAAUGGCGAACGUCGUUUUGGGACUUGGGCAGCACACGUUGCC .((((..((((.(((((((....))).)))))))).((((....((.((((((....))))))..(((((((.......)))))))..))....))))..))))(((((....))))). ( -40.20) >DroSec_CAF1 36562 115 + 1 CCCAAC----AUAUAGAUACAUAUGCACUAUUUGGCCCCAUUCAGAGGCUCUGGAGCCAGAGCAAUUUGCCGCUCUUAAUGGCGAACGUCGUUUUGGGACUUGGGCAGCACACGUUGCC ((((((----((((......)))))........(((...........((((((....))))))..(((((((.......))))))).)))...))))).....((((((....)))))) ( -35.00) >DroAna_CAF1 28059 93 + 1 UC--------AUAGACG-----------UAUUUGCCCCCAUUUUGG-----UGGCUCCAGAGCAAUUUGCCGCUUUUAGUGGCAGCAAGCAUGCUGAGAAUU--GCAGCACACGCUGCC ((--------.(((.((-----------(.(((((..(((((..((-----((((.............))))))...)))))..))))).)))))).))...--(((((....))))). ( -32.12) >consensus CCCAAC____AUAUAGGUACAUAUGCACUAUUUGGCCCCAUUCAGAGGCUCUGGAGCCAGAGCAAUUUGCCGCUUUUAAUGGCGAACGUCGUUUUGGGACUUGGGCAGCACACGUUGCC ....................................((((.......((((((....))))))...((((((.......)))))).........)))).....((((((....)))))) (-22.53 = -23.87 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:19 2006