Locus 2061

Sequence ID 2R_DroMel_CAF1
Location 7,740,814 – 7,740,919
Length 105
Max. P 0.625345
window3417

overview

Window 7

Location 7,740,814 – 7,740,919
Length 105
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.54
Mean single sequence MFE -44.42
Consensus MFE -27.07
Energy contribution -28.82
Covariance contribution 1.75
Combinations/Pair 1.22
Mean z-score -1.93
Structure conservation index 0.61
SVM decision value 0.19
SVM RNA-class probability 0.625345
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7740814 105 + 20766785
AGGGCGGAGGGUGCGGCAUAGAU------------CUGCUGCUGGCAUUCGCUGCAAUCCGGUAUGCUGCAGUACGGCAGUGAAGCAUAGGGAUUACAGUAGUCGUAGGCGGGCGAA
..((((((..(((...)))...)------------)))))(((.((...(((((((((((..((((((....(((....))).)))))).)))))...)))).))...)).)))... ( -35.60)
>DroVir_CAF1 26801 117 + 1
AGUGUGGAGGGUGCGGCAUAGAUGAGGGACGUCGCCUGCUGCUGGCACUCGGCGCAAUCCGGUAGGCUGCAAUACGGCAUUGUAGCAUAUGGAUUGCAAUAGUCGUAGGCGGGCGAG
.((((.(......).))))............(((((((((((((.....))))((((((((....((((((((.....))))))))...))))))))..........))))))))). ( -47.70)
>DroGri_CAF1 29937 117 + 1
AGUGUGGAGGGUGCUGCAUAGAUCAACGAGGUUGCCUGCUGCUGGCACUCAUCGCAAUCCGGUAGGCUGCAAUACGGCAUUGUAGCAUAGGGAUUGCAAUAAUCAUAGGCGGGCGAU
.((.(((((((((((((((((..((((...)))).))).))).))))))).))(((((((.....((((((((.....))))))))....)))))))............)).))... ( -41.20)
>DroWil_CAF1 35303 117 + 1
AGUGUCGAGGGAGCGGCGUAAAUCAAUGAUGUGGCAUGGUACUGGCACUCAUUGCAAUCCGGUAUGCUGCAAUAAGGCAAUGUAGCAUAGGGAUUGCAAUAAUCAUUGGCGGGCGAU
...((((......))))((...(((((((((((.((......)).)))..((((((((((..(((((((((.........))))))))).)))))))))).))))))))...))... ( -42.20)
>DroMoj_CAF1 29499 117 + 1
AGUGUGGAUGGCGCCGCAUAGAUGAGGGACGUCGCCUGCUGUUGGCACUCGGCACAAUCCGGUACGCUGCAAUACGGCAGUGUAGCAUAGGGAUUGCAAAAGUCGUACGCGGGCGAG
.((((((......))))))............((((((((.((((((.....(((..(((((.((((((((......)))))))).)....)))))))....)))).)))))))))). ( -44.80)
>DroAna_CAF1 23081 117 + 1
AGGGUCGAGGGGGCGGCGUAGAUGAGCGACGUGGCCUGCUGCUGGCACUCGCUGCAAUCCGGUAGGCUGCAGUACGGCAGUGUAGCGUACGGAUUGCAGUAGUCGUAGGCGGGCGAA
...(((.((.((((.((((.(.....).)))).)))).))(((.(((((.(((((((((((.((.((((((.(.....).)))))).)))))))))))))))).)).))).)))... ( -55.00)
>consensus
AGUGUGGAGGGUGCGGCAUAGAUGAGCGACGUCGCCUGCUGCUGGCACUCGCCGCAAUCCGGUAGGCUGCAAUACGGCAGUGUAGCAUAGGGAUUGCAAUAGUCGUAGGCGGGCGAA
.((((((......))))))..............(((((((..((((....((.(((((((.....((((((.........))))))....))))))).)).))))..)))))))... (-27.07 = -28.82 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:16 2006