Locus 2060

Sequence ID 2R_DroMel_CAF1
Location 7,738,516 – 7,738,623
Length 107
Max. P 0.998714
window3416

overview

Window 6

Location 7,738,516 – 7,738,623
Length 107
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 79.61
Mean single sequence MFE -36.63
Consensus MFE -28.37
Energy contribution -28.93
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -3.17
Structure conservation index 0.77
SVM decision value 3.20
SVM RNA-class probability 0.998714
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7738516 107 + 20766785
AUCUUCUUUGGUUGCCAAUUGGGUGGGGAGGGGGAGGGGCUU-GCAAAUUGGGAGCACUUUUCCAGGCCAAAUUCGAGCACUCGUUCGCAGAGAAAGAGAGAUAGGAA
(((((((((..((((.....((((..((..((..(((.((((-.(.....).)))).)))..))...))..))))((((....))))))))..))))).))))..... ( -35.70)
>DroEre_CAF1 22004 88 + 1
AUCUUGUUUAGCUGCA--------------GUCGAGGGGCCUGGCAAAUUGGGAGCACUUUUCCAGGCCAAAUUCGAGCACUCGUUCGCAGC------GAGAUAGGAA
.((((((((.(((((.--------------...(((.(((((((.(((.((....)).))).)))))))...)))((((....)))))))))------.)))))))). ( -40.40)
>DroYak_CAF1 22513 88 + 1
AUCUUGCUUAGCUGCA--------------GUCGAGGGGCCUGCCAAAUUGGGAGCACUUUUCCAGGCCAAAUUCGAGCACUCGUUCGCAGC------GAGAUAGGAA
.((((((((.(((((.--------------...(((.((((((..(((.((....)).)))..))))))...)))((((....)))))))))------))).))))). ( -33.80)
>consensus
AUCUUGUUUAGCUGCA______________GUCGAGGGGCCUGGCAAAUUGGGAGCACUUUUCCAGGCCAAAUUCGAGCACUCGUUCGCAGC______GAGAUAGGAA
(((((.....(((((..................(((.(((((((.(((.((....)).))).)))))))...)))((((....)))))))))......)))))..... (-28.37 = -28.93 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:15 2006