Locus 206

Sequence ID 2R_DroMel_CAF1
Location 1,493,991 – 1,494,086
Length 95
Max. P 0.721415
window469

overview

Window 9

Location 1,493,991 – 1,494,086
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.67
Mean single sequence MFE -23.00
Consensus MFE -13.12
Energy contribution -13.48
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -1.96
Structure conservation index 0.57
SVM decision value 0.40
SVM RNA-class probability 0.721415
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1493991 95 + 20766785
ACGUUCGGAAGGCUACAUUCCAUCCAAUUAUGUGGCCAAGUUGAAAUCAAUCGAAGCAGAACCGUAAGUAGACUUAAUGCAUAUGCCUGAAUGAA
.(((((((..((((((((...........))))))))..((((....))))....(((......((((....)))).......)))))))))).. ( -24.32)
>DroPse_CAF1 69339 82 + 1
CCGAUCGGAGGGCUACAUACCGUCGAACUAUGUGGCCAAGCUGAAAUCCAUCGAAGCAGAACCGUAAGUGCU--CAUUGAAUUU-----------
....((((..(((((((((.........)))))))))...))))......((((((((....(....)))))--..))))....----------- ( -20.70)
>DroSim_CAF1 28850 95 + 1
ACGUUCGGAAGGCUACAUUCCAUCCAACUAUGUGGCCAAGUUGAAAUCAAUCGAAGCAGAACCGUAAGUACACUUAAUGCAUUUGCCUGAAUGAA
.(((((((..((((((((...........))))))))..((((....))))....(((((....((((....)))).....)))))))))))).. ( -25.50)
>DroEre_CAF1 33452 95 + 1
ACGUUCGGAAGGCUACAUUCCAUCCAACUAUGUGGCCAAAUUAAAAUCUAUCGAAGCAGAACCGUAAGUACAAUUAAUGCAUUUGCUCGAAUCUC
......(((.((((((((...........)))))))).............((((.(((((....(((......))).....))))))))).))). ( -19.90)
>DroYak_CAF1 43655 95 + 1
ACGUUCAGAAGGCUACAUUCCAUCCAACUAUGUGGCUAAAUUAAAAUCUAUCGAAGCAGAACCGUAAGUAAAAUUUAUGAAUUUGCCUGAAUGAA
.(((((((..((((((((...........))))))))..................(((((..(((((((...)))))))..)))))))))))).. ( -24.80)
>DroPer_CAF1 65463 82 + 1
CCGAUCGGAGGGCUACAUACCGUCGAACUAUGUGGCCAAGCUGAAAUCCAUCGAAGCAGAACCGUAAGUGCU--CAUCGAAUUU-----------
....((((..(((((((((.........)))))))))...))))......((((((((....(....)))))--..))))....----------- ( -22.80)
>consensus
ACGUUCGGAAGGCUACAUUCCAUCCAACUAUGUGGCCAAGUUGAAAUCAAUCGAAGCAGAACCGUAAGUACA_UUAAUGAAUUUGCCUGAAUGAA
((...(((..((((((((...........)))))))).............((......)).)))...)).......................... (-13.12 = -13.48 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:25 2006