Locus 2059

Sequence ID 2R_DroMel_CAF1
Location 7,736,690 – 7,736,783
Length 93
Max. P 0.514828
window3415

overview

Window 5

Location 7,736,690 – 7,736,783
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 84.03
Mean single sequence MFE -17.35
Consensus MFE -10.69
Energy contribution -11.05
Covariance contribution 0.36
Combinations/Pair 1.21
Mean z-score -1.86
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.514828
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7736690 93 - 20766785
ACACAAAAAUUUGCAUUUAUCUGUGUUACUAUGUGCCAGAAUAUAC-CAUAUAUAUACAUACAUACAUAUCCUGUAUAUUUUGUGUUUAAGACG
((((((((...((((..(((.(((((...((((((...........-....))))))...))))).)))...))))..))))))))........ ( -14.16)
>DroSec_CAF1 26485 84 - 1
ACACAAAAAUUUGCAUUUAUCUGUGUUACUAUGUGCCAGAAUGUAC-CAUAUACAUAC--------AUAU-CUGUAUAUGUUGUGCUUAAGACG
.(((((.....(((((...((((.((........))))))))))).-((((((((...--------....-.)))))))))))))......... ( -17.40)
>DroSim_CAF1 33328 84 - 1
ACACAAAAAUUUGCAUUUAUCUGUGUUACUAUGUGCCAGAAUAUAC-CAUAUACAUAC--------AUAU-CUGUAUAUGUUGUGCUUAAGACG
.(((((.............((((.((........))))))......-((((((((...--------....-.)))))))))))))......... ( -15.30)
>DroEre_CAF1 20045 77 - 1
ACACAAAAAUUUGCAUUUAUCUGUGUUACUAUGUGCCAGAAUGUAUACGUAUA----------------U-CUUUAUAUGUAGUGUUUAAGACG
((((.......(((((...((((.((........)))))))))))((((((((----------------.-...))))))))))))........ ( -16.10)
>DroYak_CAF1 20557 85 - 1
ACACAAAAAUUUGCAUUUAUCUGUGCUACGAUGUGCCAGAAUGUAUACGCAUACGUAU--------ACGU-UUGUAUAUGUUGUGUUUAAGACG
((((((......((((......))))....((((((..(((((((((((....)))))--------))))-)))))))).))))))........ ( -23.80)
>consensus
ACACAAAAAUUUGCAUUUAUCUGUGUUACUAUGUGCCAGAAUGUAC_CAUAUACAUAC________AUAU_CUGUAUAUGUUGUGUUUAAGACG
.(((((.............((((.((........)))))).......((((((((.................)))))))))))))......... (-10.69 = -11.05 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:14 2006