Locus 2055

Sequence ID	2R_DroMel_CAF1
Location	7,728,121 – 7,728,212
Length	91
Max. P	0.578018

overview

Window 8

Location	7,728,121 – 7,728,212
Length	91
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	90.10
Mean single sequence MFE	-26.38
Consensus MFE	-22.06
Energy contribution	-24.98
Covariance contribution	2.92
Combinations/Pair	1.04
Mean z-score	-1.34
Structure conservation index	0.84
SVM decision value	0.09
SVM RNA-class probability	0.578018
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7728121 91 + 20766785
--AUUUCUUGCCGAGGGAGCGACGUCUGGGAGCUGAGAAUUUGAGAAUUUCCGAAUUUUUAGCUCUGACCUGCUCGCAUAUGUAAAUUGAUGG
--.....((((...(.(((((..(((..(((((((((((((((.(.....))))))))))))))))))).))))).)....))))........ ( -29.30)
>DroSec_CAF1 18164 91 + 1
--AUUUCUUGCCGAGGGAGCGACGUCUGGGAGCUGAGGAUUUGAGAAUUUCCGAAUUUUUAGCUCUGACCUGCUCGCAUAUGUAAAUUGAUGG
--.....((((...(.(((((..(((..(((((((((((((((.(.....))))))))))))))))))).))))).)....))))........ ( -28.90)
>DroSim_CAF1 16471 91 + 1
--AUUUCUUGCCGAGGGAGCGACGUCUGGGAGCUGAGGAUUUGAGAAUUUCCGAAUUUUUAGCUCUGACCUGCUCGCAUAUGUAAAUUGAUGG
--.....((((...(.(((((..(((..(((((((((((((((.(.....))))))))))))))))))).))))).)....))))........ ( -28.90)
>DroEre_CAF1 11599 82 + 1
--GCUUCUUGCCGAGGGAGCGACGUCUGGGAGCUGAGGAUUUGAUAAUU---------UUAGCUCUGACCUGCUCGCAUAUGUAAAUUGAUGG
--(((((((....))))))).((((.((.((((...(((.((((.....---------)))).))).....)))).)).)))).......... ( -22.40)
>DroYak_CAF1 11929 84 + 1
CUGUUUCUUGCCGAGGGAGCGACGUCUGGGAGCUCAGGAUUUGAUAAUU---------UCAGCUCUGACCUGCUCGCAUAUGUAAAUUGAUGG
.((((((((....))))))))((((.((.(((((((((..((((.....---------)))).)))))...)))).)).)))).......... ( -22.40)
>consensus
__AUUUCUUGCCGAGGGAGCGACGUCUGGGAGCUGAGGAUUUGAGAAUUUCCGAAUUUUUAGCUCUGACCUGCUCGCAUAUGUAAAUUGAUGG
.......((((...(.(((((..(((..(((((((((((((((........)))))))))))))))))).))))).)....))))........ (-22.06 = -24.98 +   2.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:08 2006