Locus 2052

Sequence ID 2R_DroMel_CAF1
Location 7,723,910 – 7,724,009
Length 99
Max. P 0.617596
window3401

overview

Window 1

Location 7,723,910 – 7,724,009
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 71.93
Mean single sequence MFE -22.39
Consensus MFE -8.51
Energy contribution -9.07
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.90
Structure conservation index 0.38
SVM decision value 0.17
SVM RNA-class probability 0.617596
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7723910 99 - 20766785
----CACUAUACCAAACCCCAUCGCCCCCCCCCCCCCCCAUCACUUUUCCAAGGAUCCAAUGAGG-CAGUGAAGCAUGCAAUUUGCUAG-CUUAUUUAUGGGGCC
----...................(((((............(((((((((...(....)...))))-.)))))(((..((.....))..)-)).......))))). ( -19.90)
>DroSec_CAF1 13972 82 - 1
----CACUAUAGCCAACCCC-----------------CCCACACUUUUCCAAGGAUCCGAUGAGG-CAGUGAAGCAUGCAAUUUGCUGG-CUUAUUUAUGGGGCC
----...............(-----------------((((......((....))...((((((.-(((..((........))..))).-))))))..))))).. ( -21.70)
>DroSim_CAF1 11791 82 - 1
----CACUAUAGCCAACCCC-----------------CCCACACUUUUCCAAGGAUCCGAUGAGG-CAGUGAAGCAUGCAAUUUGCUGG-CUUAUUUAUGGGGCC
----...............(-----------------((((......((....))...((((((.-(((..((........))..))).-))))))..))))).. ( -21.70)
>DroEre_CAF1 7702 77 - 1
---------CAACCCCCUUU-----------------UUCCCACUUUCCCAAGGAUCCGAUGAGG-CAGUGAAGCAUGCAAUUUGCUGG-CUUAUUUAUGGGGCC
---------....((((...-----------------.(((...........)))...((((((.-(((..((........))..))).-))))))...)))).. ( -20.90)
>DroWil_CAF1 8538 87 - 1
UCUCCUCCAAUCCCUAUGGU-----------------CUUCCUUUUUGCUG-CUUGUCGUUGAGUCCAGCCAAGCAUGCAAUUUGUUGGCCUUAUUUAUGUGGCC
......(((........(((-----------------(.......((((((-((((..((((....)))))))))).))))......)))).........))).. ( -21.75)
>DroYak_CAF1 7605 86 - 1
UUUCCACUACACCCCACAGC-----------------CCCCCACUUUUCCAAGGAUCCGAUGAGG-CAGUGAAGCAUGCAAUUUGCUGC-CUUAUUUAUGGGGCC
..................((-----------------(((.......((....))...(((((((-(((..((........))..))))-))))))...))))). ( -28.40)
>consensus
____CACUAUACCCAACCCC_________________CCCCCACUUUUCCAAGGAUCCGAUGAGG_CAGUGAAGCAUGCAAUUUGCUGG_CUUAUUUAUGGGGCC
....................................................((.(((.(((((...((...((((.......))))...))..))))).))))) ( -8.51 =  -9.07 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:01 2006