Locus 205

Sequence ID 2R_DroMel_CAF1
Location 1,490,630 – 1,490,731
Length 101
Max. P 0.682835
window468

overview

Window 8

Location 1,490,630 – 1,490,731
Length 101
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 78.10
Mean single sequence MFE -19.93
Consensus MFE -10.96
Energy contribution -11.60
Covariance contribution 0.64
Combinations/Pair 1.29
Mean z-score -1.87
Structure conservation index 0.55
SVM decision value 0.31
SVM RNA-class probability 0.682835
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1490630 101 + 20766785
CAAACACAAAUAAAUUAACUUGCAAACAAUAUAUAGAUCGCUAACAGCUCGCGUUGAAACAGAAUGUGAGUGAGUAAGCCGAUAGGUAAGCUAUUUAUGU-----------------U
.........((((((...(((((.............((((((.((.(((((((((.......)))))))))..)).)).))))..)))))..))))))..-----------------. ( -21.26)
>DroSec_CAF1 21592 99 + 1
CAAACACAAAUAAAUCAACUUGCAAACAAUAUAU--AUCGCUAACAGCUCGCAUUGAAACAGAAUGUGAGUGAGUAAGCCGAUAGGUAAGCUAUUUAUGU-----------------U
.........((((((...(((((..........(--((((((.((.(((((((((.......)))))))))..)).)).))))).)))))..))))))..-----------------. ( -22.60)
>DroSim_CAF1 25129 99 + 1
CAAACACAAAUAAAUCAACUUGCAAACAAUAUAU--AUCGCUAACAGCUCGCAUUGAAACAGAAUGUGAGUGAGUAAGCCGAUAGGUAAGCUAUUUAUGU-----------------U
.........((((((...(((((..........(--((((((.((.(((((((((.......)))))))))..)).)).))))).)))))..))))))..-----------------. ( -22.60)
>DroEre_CAF1 30633 111 + 1
UAAACAAAAAUAAAUAAAUUUGCAAACA-----U--GUCGCAAACACCUACCGUUUAAACAGAAUGUCAGUGAGUAAUCCGAUAGGUUAGCAAUGUAUGUGAGCAUACACCAUACAGU
...................((((.(((.-----(--((((...((.(((..(((((.....)))))..)).).))....))))).))).))))((((((....))))))......... ( -19.50)
>DroYak_CAF1 39397 96 + 1
AAAACACAGAUAAAUUAAUUUACAAACACAA--U--GUCGCAAAAAGCUUACGAUUAAACAGAAUGUGAGUGAGUAAUCCGAUAGGUUA-UAGUGUAUGC-----------------U
...((((((((......))))...(((....--(--((((......(((((((.((.....)).)))))))((....))))))).))).-..))))....-----------------. ( -13.70)
>consensus
CAAACACAAAUAAAUCAACUUGCAAACAAUAUAU__AUCGCUAACAGCUCGCGUUGAAACAGAAUGUGAGUGAGUAAGCCGAUAGGUAAGCUAUUUAUGU_________________U
.........((((((...(((((.............((((......(((((((((.......)))))))))........))))..)))))..)))))).................... (-10.96 = -11.60 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:24 2006