Locus 2048

Sequence ID 2R_DroMel_CAF1
Location 7,717,799 – 7,717,889
Length 90
Max. P 0.670464
window3392

overview

Window 2

Location 7,717,799 – 7,717,889
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.16
Mean single sequence MFE -34.71
Consensus MFE -22.05
Energy contribution -22.33
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -1.53
Structure conservation index 0.64
SVM decision value 0.29
SVM RNA-class probability 0.670464
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7717799 90 + 20766785
UUAGGCGUGGCAUGCGUGUGAAGCUGGCGAAGGUUUUCCCAGUCGGCCCCUCGCCAC-GCUCGGCAAUUU-----CACCUUGCCGAGCUCUGUGAC
...((((.(((((....)))..((((((...((....))..)))))).)).))))..-(((((((((...-----....)))))))))........ ( -36.40)
>DroPse_CAF1 4881 93 + 1
UUAGGCGUGGCAUGCGUGU---GCCGGUGAAGGUUUUCUCCAUCGUCCUUCUUCCAUUCCUUGGCAAGGUGAAACCGCCGAGCCAAGCGCAACGAU
....(((.(((((....))---)))((.(((((.............)))))..))....((((((..((((....))))..)))))))))...... ( -33.12)
>DroEre_CAF1 1674 90 + 1
UUAGGCGUGGCAUGCGUGUGAAGCUGGCGAAGGUUUUCCCAGUCGGCCUCUCGCCAC-GCUCGGCAAUUU-----CACCUUGCCGAGCUCUGUGAC
.((((.(((((......(.((.((((((...((....))..)))))).)).))))))-(((((((((...-----....))))))))))))).... ( -35.40)
>DroYak_CAF1 1650 90 + 1
UUAGGCGUGGCAUGCGUGUAAAGCUGGCGAAGGUUUUCCCAGUCGGCCGCUCGCCAC-GCUCGGCAAUUU-----CACCUUGCCGAGCUCUGUGAC
.((((.(((((..(((.((...(((((.(((....))))))))..)))))..)))))-(((((((((...-----....))))))))))))).... ( -40.70)
>DroAna_CAF1 1945 90 + 1
UUAGGCGUGGCAUGCGUGUGAAGCUGGCGAAGGUUUUCCCUGUCGGCCUUUCGCCAU-GCUCGGAAAUUU-----CACCUUGCCGAGCUGAGUGAC
...(((.(((((...(.((((((((((((((((((.........)))).))))))).-)))........)-----)))).))))).)))....... ( -29.50)
>DroPer_CAF1 4391 93 + 1
UUAGGCGUGGCAUGCGUGU---GCCGGUGAAGGUUUUCUCCAUCGUCCUUCUUCCAUUCCUUGGCAAGGUGAAACCGCCGAGCCAAGCGCAACGAU
....(((.(((((....))---)))((.(((((.............)))))..))....((((((..((((....))))..)))))))))...... ( -33.12)
>consensus
UUAGGCGUGGCAUGCGUGUGAAGCUGGCGAAGGUUUUCCCAGUCGGCCUCUCGCCAC_GCUCGGCAAUUU_____CACCUUGCCGAGCUCAGUGAC
...((((.(((..((.......))((((...((....))..)))))))...))))...(((((((((............)))))))))........ (-22.05 = -22.33 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:52 2006