| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,715,685 – 7,715,786 |
| Length | 101 |
| Max. P | 0.712047 |
| Location | 7,715,685 – 7,715,786 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.61 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -13.58 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7715685 101 + 20766785 -CCAUGUCAUGAAGAU-------GGAAAAAGGGUUUUAGCUCUAGCUUUAU-UGA---U--AUGUUUACCUGAACACAGGGGAGCAGUGGACGCUCAUGUUGCGGUGACGCUUCU -.((((((((((((.(-------....).(((((....)))))..))))).-)))---)--)))....((((....)))).((((.......)))).....(((....))).... ( -28.70) >DroGri_CAF1 6100 108 + 1 -CCAGAUUGCGUAAAUAAGCGCAGCAAAAAUGG------CAAUUGGGUGAGUAAAAUAUUUAAACAAACCUGAAUGCGGGUGAGCAAUGGACGCUCAUGUUGCGAUGACGUUUCU -..(((..((((.......((((((.......(------((.(..(((..((...........))..)))..).)))..((((((.......))))))))))))...)))).))) ( -31.00) >DroSim_CAF1 6697 97 + 1 -CCAUGUCAUGGAGAU-------GGAAAAACGGCUUCAAGCUGAGCUUUA--------U--AUGUUUACCUGAAAACAGGGGAGCAGUGGACGCUCAUGUUGCGGUGACGCUUCU -((((.((...)).))-------))...((((((.....)))((((((((--------(--.((((..((((....))))..))))))))).))))..)))(((....))).... ( -32.30) >DroEre_CAF1 5705 101 + 1 -CAAUGACAUGAAGAU-------GGCAAAACGUAAUUAAUUAUAGCUUUAU-AAA---U--AUGUUUACCUGAAAACAGGGGAGCAGUGGACGCUCAUGUUGCGGUGACGCUUCU -....(((((((..((-------(......)))...........(((((((-...---.--.((((..((((....))))..))))))))).)))))))))(((....))).... ( -26.00) >DroYak_CAF1 5750 102 + 1 AGCAUAACAUGAAGAU-------GGGAAAACGUAAUUAAUUAUAGCUUCAU-UGA---U--AUGUUUACCUGAAAACAGGAGAGCAGUGGACGCUCAUGUUGCGGUGACGCUUCU .....(((((((..((-------(......)))...........(((((((-...---.--.(((((.((((....)))).)))))))))).)))))))))(((....))).... ( -27.00) >consensus _CCAUGUCAUGAAGAU_______GGAAAAACGGAAUUAACUAUAGCUUUAU_AAA___U__AUGUUUACCUGAAAACAGGGGAGCAGUGGACGCUCAUGUUGCGGUGACGCUUCU ..........((((................................................((((..((((....))))..))))((.(.(((.......))).).)).)))). (-13.58 = -13.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:51 2006