Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,713,668 – 7,713,788 |
Length | 120 |
Max. P | 0.500000 |
Location | 7,713,668 – 7,713,788 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.39 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -15.23 |
Energy contribution | -14.45 |
Covariance contribution | -0.78 |
Combinations/Pair | 1.53 |
Mean z-score | -1.94 |
Structure conservation index | 0.41 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7713668 120 - 20766785 CGGACACACGUUUCAGCGUAGCCACUCCAGCAAUCACAGAGCUGAGCAAGCUCUGUACAAUGCUGGAUUUCAGCAACCCAGCGGUGACUGCCCCGUUGUACACUCUGUUCGCUGGCAACC .........(((((((((.(((...(((((((...((((((((.....))))))))....))))))).....(((((...(((....).))...))))).......))))))))).))). ( -42.80) >DroVir_CAF1 4191 120 - 1 CCGACACACGCUUUGGCGUAGCCACGCCUGCCAUUGCCGAGCUGAGCAAAUUAUGCACCAUGCUGGACUUUACUAGUCCAGCUGUUACUUCAGCUCUGUACACACUGUUCAUUGGCAAUC .........((...(((((....))))).)).((((((((((((((((.....)))..((.((((((((.....)))))))))).....)))))))((.((.....)).))..)))))). ( -44.70) >DroPse_CAF1 3800 120 - 1 CAGAUACUCGCUUCAGUGUAGCGACGCCGGCCAUAGCUGAGCUAAGCAAGCUGUGCACUAUGCUGGACUUCAGUAAUCCAGCCGUCACGGCUCCCCUCUACACCCUCUUCAUUGGUAAUC ...............((((((.(..((((((....)))).))......(((((((.((...((((((.........)))))).)))))))))...).))))))((........))..... ( -33.30) >DroWil_CAF1 3838 120 - 1 CGGACACCCGCUUCAGCGUAGCUACGCCAGCUAUCACAGAAUUGAGCAAAGUUUGCACUAUGCUGGAUUUUCAACAGCCAGUUGUGACCGCUCCAUUGUACACCCUUUACAUUGGUAACC (((....)))....(((((((((.....)))))((((((((((.((((.(((....))).)))).)))))).(((.....))))))).))))(((.((((.......)))).)))..... ( -28.60) >DroMoj_CAF1 3991 120 - 1 CUGAUACGCGUUUCAGCGUGGCCACGCCUGCCAUUGCUGAGUUGAGUAAAUUGUGCACCAUGCUGGAUUUUAGUAACCCAGCUGUGACAUCUCCUCUCUACACGCUCUUCAUUGGCAAUC .....((((......))))(((...)))(((((.((..((((.(((.....(((.(((...(((((.((.....)).))))).))))))......))).....))))..)).)))))... ( -35.50) >DroAna_CAF1 3688 120 - 1 CAGAUACUCGCUUCAGUGUAGCCACUCCAGCGAUCGCGGAGUUGAGCAAACUUUGCACUAUGCUGGACUUUAGCAACCCCGCAGUUACGGCUCCUCUGUAUACCCUCUUUGCUGGGAACC .............(((.(.((((..(((((((...((((((((.....))))))))....))))))).....((......))......)))).).)))....(((........))).... ( -35.30) >consensus CAGACACACGCUUCAGCGUAGCCACGCCAGCCAUCGCAGAGCUGAGCAAACUGUGCACUAUGCUGGACUUUAGUAACCCAGCUGUGACGGCUCCUCUGUACACCCUCUUCAUUGGCAACC ........(((....))).......(((((.....((..((((.....))))..)).....(((((...........))))).............................))))).... (-15.23 = -14.45 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:50 2006