Locus 2044

Sequence ID 2R_DroMel_CAF1
Location 7,708,089 – 7,708,179
Length 90
Max. P 0.640121
window3387

overview

Window 7

Location 7,708,089 – 7,708,179
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 80.86
Mean single sequence MFE -19.72
Consensus MFE -15.21
Energy contribution -16.10
Covariance contribution 0.89
Combinations/Pair 1.33
Mean z-score -1.30
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.640121
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7708089 90 + 20766785
UUAAUCCAAAGUCCUUCAUGUUGGAGUCUGAGAAUGAGAUAUACCUAAGAUUCUGCAGGAGUAGUUUGUAGAGUUAUAGGCAUCCUAAAA
(((.((((.(.(((........))).).)).)).)))(((...((((.(((((((((((.....))))))))))).)))).)))...... ( -21.00)
>DroPse_CAF1 11523 90 + 1
UCAAUCCGAAAACGUUCAUGCUGGAAUCUAAGGAUGAGAUAUAUUUGCGAUUUUACAGGGAUAAGCUAUAAAUUAACUGCAAUGUUUCAC
..((((((((....(((((.((........)).))))).....)))).)))).....(..(((.((............))..)))..).. ( -12.60)
>DroSec_CAF1 11941 90 + 1
UCAAUCCAAAGUCCUUCAUGUUGGAGUCUCAGAAUGAGAUAUACCUAAGAUUCUGCAGGAGUAGUUUGUAGAGUUAUAGGCAUCCUAAAA
....(((((.((.....)).)))))(((((.....)))))...((((.(((((((((((.....))))))))))).)))).......... ( -23.60)
>DroSim_CAF1 12120 90 + 1
UCAAUCCAAAGUCCUUCAUGUUGGAGUCUCAGGAUGAGAUAUACCUAAGAUUCUGCAGGAAUAGUUUGUAGAGUUAUAGGCAUCCUAAAA
....(((((.((.....)).))))).....((((((.......((((.(((((((((((.....))))))))))).)))))))))).... ( -24.61)
>DroEre_CAF1 11620 88 + 1
UUAAUCCAAAGUCCUUCAUGUUGGAGUCUCAGAAUGAGAUUUACUUAAGAUUCUGCAGGAGCAGUUUGUA--GUUAUAAGUACCCAAAAA
....................((((((((((.....))))))((((((.((((((((....)))).....)--))).)))))).))))... ( -17.30)
>DroYak_CAF1 10151 88 + 1
UUAAUCCAAAGUCCUUCAUGUUGGAGUCUCAGGAUGAGAUUUACUUACGAUUCUGCAGCAGUAAUUUGUA--GUUGUAAGAAACCAAAAA
....................((((((((((.....))))))..(((((((..((((((.(....))))))--))))))))...))))... ( -19.20)
>consensus
UCAAUCCAAAGUCCUUCAUGUUGGAGUCUCAGAAUGAGAUAUACCUAAGAUUCUGCAGGAGUAGUUUGUAGAGUUAUAGGCAUCCUAAAA
....(((((.((.....)).)))))(((((.....)))))...((((.(((((((((((.....))))))))))).)))).......... (-15.21 = -16.10 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:47 2006