Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,689,124 – 7,689,235 |
Length | 111 |
Max. P | 0.755596 |
Location | 7,689,124 – 7,689,235 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.24 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -16.80 |
Energy contribution | -17.43 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.20 |
Mean z-score | -2.08 |
Structure conservation index | 0.68 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7689124 111 - 20766785 AGUUUUCUCUAUUCUUUGUUUACUUGUUUCUCUUCCAUCGGAAAUGGCAUUUGGUAAUUUUGCUUUAUGCGAUCCAAUUGGGAAGAUACUCGUUAACAACUGGUAUUUCUU .........((((..(((((.((..((.(((.(((((..(((..(.((((..((((....))))..)))).))))...)))))))).))..)).)))))..))))...... ( -24.10) >DroSec_CAF1 8046 109 - 1 UGUUUUCGCUAUUCUUUGUUUACCUGUUUCUUUUCCAUCGGAAAUGGCAUUUUG-AAUAUUGCUUUA-GCAAUCCAAUUGGGAAGGUACUCGUUAAAAACUGGUAUUUAUU .......((((..(..((((((..((((...(((((...))))).))))...))-))))..)...))-))..(((.....)))(((((((.((.....)).)))))))... ( -19.00) >DroEre_CAF1 10487 111 - 1 UGUUUUCUCUAUUCUUUGUUUACCUGUUUCUUUUCCAUGGGAAAUGGCAUUUGGCAAUUUCGCUUUAUGCAAUCCAAUUGGAGAGGUUCUCGGUAAUAACCGGUAUUUCUU ....................((((.....((((((((..(((....((((..(((......)))..))))..)))...)))))))).....(((....)))))))...... ( -28.50) >DroYak_CAF1 10440 111 - 1 UAUUUUCUCUAUUCUUUGUUUACCUGUUCCUUUUCCAUCGGAAAUGGCAUUUGGCACAUUCGCUUUAUGCAAUUCAAUUGGUGAGGUACGCGGUAAUAACCGGUAUUUCUU ....................((((.((.((((..(((...(((...((((..(((......)))..))))..)))...))).)))).))..(((....)))))))...... ( -26.90) >consensus UGUUUUCUCUAUUCUUUGUUUACCUGUUUCUUUUCCAUCGGAAAUGGCAUUUGGCAAUUUCGCUUUAUGCAAUCCAAUUGGGAAGGUACUCGGUAAUAACCGGUAUUUCUU ....................((((.(((.((((((((..(((....((((..(((......)))..))))..)))...))))))))...........))).))))...... (-16.80 = -17.43 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:46 2006