Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,680,975 – 7,681,065 |
Length | 90 |
Max. P | 0.728611 |
Location | 7,680,975 – 7,681,065 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 78.28 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -17.21 |
Energy contribution | -18.65 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.65 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7680975 90 + 20766785 --CAUUGGCUAGAGUUUAAAUAGAAUAUAUCCUGGCCACAGGAUACAGGAUU--AUCCUAGUGGCGACGCGAUCCCGUGUGCCGCUUGUGAUGC --...(((((((..(.((.......)).)..))))))).((((((......)--)))))((((((.(((((....)))))))))))........ ( -29.70) >DroSim_CAF1 2397 87 + 1 --CAUAGGCUAGAGUUUAAAUAGAAUAUAUCCUGGCCACAUGUCCC---AUC--AUCCUAGUGGCGACGCGAUCCCGUGUGCCGCUUGUGAUGC --....((((((..(.((.......)).)..))))))........(---(((--((...((((((.(((((....))))))))))).)))))). ( -30.40) >DroEre_CAF1 2467 92 + 1 CACAUAAGCUAGAGUUUAAAUAGAAUAUAUAUUGGCCACAUCCUU--GGUCCACAUCCUAGUGGCGACGCGAUCCUGUGUGCCGCUUGUGAUGC ....(((((....)))))..............((((((......)--)).)))(((((.((((((.(((((....))))))))))).).)))). ( -25.70) >DroYak_CAF1 2419 76 + 1 --------------UUUAAAUAGAAUAAAUCUCAGCCACAUCCUU--GGACU--AUCCUAGUGGCGGCGCGAUCCUGUGUGCCGCUUGUGAUGC --------------..............(((.(((((((......--((...--..))..)))))((((((......))))))...)).))).. ( -20.30) >consensus __CAUAGGCUAGAGUUUAAAUAGAAUAUAUCCUGGCCACAUCCUU__GGACC__AUCCUAGUGGCGACGCGAUCCCGUGUGCCGCUUGUGAUGC ......((((((.((.((.......)).)).)))))).................((((.((((((.(((((....))))))))))).).))).. (-17.21 = -18.65 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:30 2006