Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,679,832 – 7,679,941 |
Length | 109 |
Max. P | 0.500000 |
Location | 7,679,832 – 7,679,941 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.53 |
Mean single sequence MFE | -35.82 |
Consensus MFE | -9.46 |
Energy contribution | -10.42 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.33 |
Mean z-score | -1.73 |
Structure conservation index | 0.26 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7679832 109 - 20766785 GCCAAUGGAGUCCGCGGUGGAGAGAUCAGCCUCCUC-AGCGGGUUUCUUGUCCUG--CCAAGCGAAUGGAUUU-UGUUG-GUUGGUUUUGAAAUGG----AAAAACUAAAG--AUAUGAC (((((..((((((.(((.((((........)))).)-.(((((........))))--)....))...))))))-..)))-))(((((((.......----.)))))))...--....... ( -34.70) >DroPse_CAF1 10371 118 - 1 GCUGACAGAGUCGGCAGUAGAGAGGUCACCCUCGGACAUGAAAAUUUUCCUCUUGGAAGAAACAAAUCGAUCUACGUUGAAUUGGUCCGU--AUGGUGUGAUAUACUAUAAUUUUUUCAC ((((((...)))))).((((....(((((((.(((((.......((((((....))))))..(((.(((((....))))).)))))))).--..)).)))))...))))........... ( -37.10) >DroSec_CAF1 9562 109 - 1 GCCAAUGGAGUCUGCUGUGGAGAGAUCAGCCUCCUC-AGCGGGUUUCUUGUCCUG--CCAAGCGAUUGGAUUU-CGUGG-GUUGGUUGCGAAAUGG----AGAAACUAAAG--AUACGAC ......(((..((((((.((((........)))).)-)))))..)))((.(((..--((((....))))((((-((..(-.....)..))))))))----).)).......--....... ( -35.20) >DroSim_CAF1 9265 109 - 1 GCCAAUGGAGUCUGCGGUGGAGAGAUCAGCCUCCUC-AGCGGGCUUCUUGUCCUG--CCAAGCGAUUCGAUUU-CGUGG-GUUGGUUGGGAAAUGG----AGAAACUUAAG--AUACGAC ......(((((((((.(.((((........)))).)-.)))))))))((.((((.--((((.(((((((....-..)))-)))).)))).)...))----).)).......--....... ( -35.00) >DroPer_CAF1 12830 118 - 1 GCUGACAGAGUCGGCAGUAGAGAGGUCACCCUCGGACAUGAAAAUUUUCCUCUUGGAAGAAACAAAUCGAUCUACGUUGAAUUGGUCCGU--AUGGUGUGAUAUACUAUAAUUUUUUCAC ((((((...)))))).((((....(((((((.(((((.......((((((....))))))..(((.(((((....))))).)))))))).--..)).)))))...))))........... ( -37.10) >consensus GCCAAUGGAGUCGGCAGUGGAGAGAUCAGCCUCCUC_AGCGGGAUUCUUGUCCUG__CCAAGCGAAUCGAUUU_CGUUG_GUUGGUUCGGAAAUGG____AGAAACUAAAG__AUAUGAC (((((((((((((((...((((........))))....))))))))).....((......))..................)))))).................................. ( -9.46 = -10.42 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:29 2006