Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,678,752 – 7,678,848 |
Length | 96 |
Max. P | 0.608905 |
Location | 7,678,752 – 7,678,848 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -18.87 |
Consensus MFE | -17.75 |
Energy contribution | -17.87 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.64 |
Structure conservation index | 0.94 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7678752 96 - 20766785 CCAAAGAAAGGCAGAAAAAGUGCCAAAUAGGCAGUACAGUUGCAAAUUAACUGCCAGGUAAGAUAUUCAAACCAAGAUUAGCUGGGGGAAAAGCGA ((..((...(((((......((((.....))))(((....))).......))))).(((..(.....)..)))........))..))......... ( -20.30) >DroSec_CAF1 8468 96 - 1 CCAAAGAAAGGCAGAAAAAGUUCCAAAUAGGUAGUACAGUUACAAGUUAACUGCCAGGUAAGAAAUUCAAACCAAGAUUAGCUGGGGGAAAAGCGA ....................((((...(((.((((.((((((.....))))))...(((..(.....)..)))...)))).)))..))))...... ( -15.70) >DroSim_CAF1 8154 96 - 1 CCAAAGAAAGGCAGAAAAAGUGCCAAAUAGGCAGUACAGUUACAAGUUAACUGCCAGGUAAGAAAUUGAAACCAAGAUUAGCUGGGGGAAAAGCGA ..........((......(.((((.....)))).).((((((.....))))))((((.(((....(((....)))..))).)))).......)).. ( -20.60) >consensus CCAAAGAAAGGCAGAAAAAGUGCCAAAUAGGCAGUACAGUUACAAGUUAACUGCCAGGUAAGAAAUUCAAACCAAGAUUAGCUGGGGGAAAAGCGA ((..((...(((((......((((.....))))(((....))).......))))).(((...........)))........))..))......... (-17.75 = -17.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:27 2006