Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,678,247 – 7,678,367 |
Length | 120 |
Max. P | 0.837955 |
Location | 7,678,247 – 7,678,367 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -39.46 |
Consensus MFE | -31.54 |
Energy contribution | -31.70 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.73 |
Structure conservation index | 0.80 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7678247 120 - 20766785 CACGCCCAAGCCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUUAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUCGUGGAUACCCAGAA ((((...(((((((((...(((......)))..((((((((.....(((((.....))).)).))))))))....(((.(((.....))).)))..)))))))))))))........... ( -39.70) >DroPse_CAF1 6856 120 - 1 CACGCCAAAGCCGGACAUACUUACGGAGGAUAAACUGCAGGAGAAGGCGCUAAAGUGGCAAAAUCUGCAGUCCAAGCGUUUCGCUGAGAAGCGAAAGUUCGGCUUCGUCGACACACAGAA ..((.(.(((((((((...........(((....(((((((....(.(((....))).)....)))))))))).....(((((((....)))))))))))))))).).)).......... ( -41.20) >DroSec_CAF1 7963 120 - 1 CACGCCCAAACCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUCAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUUGUGGAUACCCAAAA ((((.((((((.((((...(((...))).(((.(((((..(((......))).....))))).)))...))))..(((.(((.....))).)))..))))))...))))........... ( -37.60) >DroSim_CAF1 7649 120 - 1 CACGCCCAAACCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUCAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUCGUGGAUACCCAAAA ((((.((((((.((((...(((...))).(((.(((((..(((......))).....))))).)))...))))..(((.(((.....))).)))..))))))...))))........... ( -39.30) >DroPer_CAF1 6857 120 - 1 CACGCCAAAGCCGGACAUACUUACGGAGGAUAAACUGCAGGAGAAGGCGCUAAAGUGGCAGAAUCUGCAGUCCAAGCGUUUCGCUGAGAAGCGAAAGUUCGGCUUCGUUGACACACAGAA .(((...(((((((((...........(((....(((((((....(.(((....))).)....)))))))))).....(((((((....)))))))))))))))))))............ ( -39.50) >consensus CACGCCCAAGCCGGACAUACUCACCGAGGAGAAGCUGCAGGAGAAGGCGCUAAAAUGGCAGCAUCUGCAGUCCAAGCGAUUCGCUGAGAAGCGCAAGUUUGGCUUCGUGGAUACCCAGAA ((((...(((((((((...........((....((((((((.....((.(......)))....))))))))))........((((....))))...)))))))))))))........... (-31.54 = -31.70 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:23 2006