Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,665,692 – 7,665,800 |
Length | 108 |
Max. P | 0.596938 |
Location | 7,665,692 – 7,665,800 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.26 |
Mean single sequence MFE | -42.40 |
Consensus MFE | -23.36 |
Energy contribution | -24.28 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.22 |
Mean z-score | -1.96 |
Structure conservation index | 0.55 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7665692 108 + 20766785 ---CUCAGUGCCGGCAGCAGAUCCUGCCGAGGAGCAGGACUCCUCAUCGUCGUUCUCAUGGAACUCGAAGCCAUUGGCGCUGCUGGAACCACCACUCAAGCGCUGGCGCUU ---...(((((((((.((((...)))).((((((.....)))))).(((..((((.....)))).))).)))...((((((..(((.....)))....)))))))))))). ( -44.80) >DroPse_CAF1 3133 105 + 1 CACUUCACCACCGCCAGCAGACCCCGACGAUG---AGGAAUCCUCGUCGUCGUUCUCGUGGAACUCAUAUCCAUUGCCAUUUGU--CGCCG-CGCUGAGGCGCAGGCAUUU ............(((.((.(((..((((((((---(((...))))))))))).....(((((.......)))))........))--))).(-(((....)))).))).... ( -38.30) >DroSim_CAF1 3255 108 + 1 ---CUCGGUGCCGGCAGCAGAUCCUGCCGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCGUUGGCGCUGCUGGAACCGCCACUCAAGCGCUGGCGUUU ---...(((.((((((((..........(((((.......))))).(((..((((.....)))).))).(((...))))))))))).)))(((((......).)))).... ( -41.50) >DroEre_CAF1 3071 108 + 1 ---CUCAGUGCCGGCAGCAGAUCCUGCCGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCAUUGGCGCUGCUGGAGCCACCGCUCAAGCGCUGGCGCUU ---...(((((((((.((((...)))).(((((.......))))).(((..((((.....)))).))).)))...((((((....((((....)))).)))))))))))). ( -45.60) >DroYak_CAF1 3268 108 + 1 ---CUCAGUGCCGGCAGCAGAGCCUGACGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCAUUGGCGGUGCUGGAGCCACCGCUCAAGCGCUGGCACUU ---...(((((((((.((.(((..(.(((((((....(((........))).))))))).)..))).......((((((((((....).)))))).)))))))))))))). ( -45.90) >DroPer_CAF1 3054 105 + 1 CACUUCACCACCGCCAGCAGACCCCGACGAUG---AGGAAUCCUCGUCGUCGUUCUCGUGGAACUCAUAUCCAUUGCCAUUUGU--CGCCG-CGCUGAGGCGCAGGCAUUU ............(((.((.(((..((((((((---(((...))))))))))).....(((((.......)))))........))--))).(-(((....)))).))).... ( -38.30) >consensus ___CUCAGUGCCGGCAGCAGAUCCUGACGAGGAACAGGACUCCUCAUCGUCGUUCUCGUGGAACUCGAAGCCAUUGGCGCUGCUGGAGCCACCGCUCAAGCGCUGGCACUU ..........((((((((.(((..((..(((........)))..))..)))((((.....))))..............)))))))).((((.(((....))).)))).... (-23.36 = -24.28 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:18 2006