Locus 203

Sequence ID 2R_DroMel_CAF1
Location 1,475,137 – 1,475,246
Length 109
Max. P 0.616513
window466

overview

Window 6

Location 1,475,137 – 1,475,246
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 71.97
Mean single sequence MFE -26.45
Consensus MFE -14.98
Energy contribution -16.10
Covariance contribution 1.12
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.57
SVM decision value 0.17
SVM RNA-class probability 0.616513
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1475137 109 + 20766785
UAAAUGUUAGAGAUAGU-GGUGUUCAGUGUUGUUAGAUGUCGAUAGUUAUCG------AUGUUGUAAGCUGU--GACAUUGGGAAUAUUCCGUCUGCACUAGCACU--GCCAAAGAAAAA
...............(.-.(((((.(((((....(((((..((((....(((------((((..(.....).--.)))))))...)))).))))))))))))))).--.).......... ( -28.00)
>DroSec_CAF1 5448 90 + 1
UAAAUGUUAGAGAUAGCAGGUGUUCAGUGUUGAUAGAUGUCGAUAGUCAUCG------AUGUUGUGAGCUGU--GACAAUGGGAAUACUCCGCCUGCA----------------------
...............(((((((((((((.......(((((((((....))))------)))))....)))).--)))....(((....))))))))).---------------------- ( -26.60)
>DroSim_CAF1 7416 90 + 1
UAAAUGUUAGAGAUAGCAGGUGUUCAGUGUUGAUAGAUGUCGAUAGUUAUCG------AUGUUGUGAGCUGU--GACAAUGGGAAUACUCCGCCUGCA----------------------
...............(((((((((((((.......(((((((((....))))------)))))....)))).--)))....(((....))))))))).---------------------- ( -26.80)
>DroEre_CAF1 7974 115 + 1
UAUACAUUAGUGAAAGCAGGUGUUCAGUGGUAUUAGACGUCGAUAGUUAUCGAGUUAAAUGUUGUGAGCUGUGUGGCACUGGAGAUUCUUAUCCUGAU-----ACUUAUCCAAAUAAAAA
........((((...(((.(.(((((.(..((((.(((.(((((....)))))))).))))..))))))).)))..))))(((........)))....-----................. ( -24.40)
>consensus
UAAAUGUUAGAGAUAGCAGGUGUUCAGUGUUGAUAGAUGUCGAUAGUUAUCG______AUGUUGUGAGCUGU__GACAAUGGGAAUACUCCGCCUGCA______________________
...............((((((((((((((((..(((....(((((..............)))))....)))...))))))))).......)))))))....................... (-14.98 = -16.10 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:22 2006