Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,662,823 – 7,662,914 |
Length | 91 |
Max. P | 0.532723 |
Location | 7,662,823 – 7,662,914 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.34 |
Mean single sequence MFE | -31.87 |
Consensus MFE | -23.70 |
Energy contribution | -23.40 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.19 |
Mean z-score | -1.34 |
Structure conservation index | 0.74 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7662823 91 - 20766785 CUGGCCGCCGGAGCCGUUAGCAAGAACCGCACUACGCCGCUAUCGGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAGGAGAAUU ((((((((....((((.((((.................)))).)))).))))))))........(((((...))))).(....)....... ( -33.43) >DroPse_CAF1 279 91 - 1 UUUGCCGGCGGUGCUGUUAGCAAAUCUCGGUCUACGCCGUUGUCAGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAAGAAAAUG ((((((((((..((((...........))))...))))).........(((((((((.((....)).)))).)))))..)))))....... ( -31.00) >DroSec_CAF1 220 91 - 1 CUGGCCGCCGGAGCCGUUGGCAAGAACCGCACUACGCCGCUAUCGGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAGGAGAAUU (((((((((((((((((..((.......))...)))..))).)))))...))))))........(((((...))))).(....)....... ( -33.50) >DroEre_CAF1 219 91 - 1 UUCGCCGCCGGAGCCAUAAGCAAGAACCGCUCUACGCCGCUAUCGGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGUAAGGAGAAUU (((.((((((((((....(((.......))).......))).))))).(((((((((.((....)).)))).)))))......)).))).. ( -31.50) >DroAna_CAF1 291 85 - 1 C------UCGGCGCUGUGAGUAAGAUCCGCUCCACUCCUCUGUCAGCGGUGGCCAGUAACAAACGUGGCUGUGCCACACGCAAGGAGAACA (------((((((..(.((((.((.....))..)))))..)))).((((((((((((.((....)).)))).))))).)))...))).... ( -30.80) >DroPer_CAF1 199 91 - 1 UUUGCCGGCGGUGCUGUUAGCAAAUCUCGGUCUACGCCGUUGUCAGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAAGAAAAUG ((((((((((..((((...........))))...))))).........(((((((((.((....)).)))).)))))..)))))....... ( -31.00) >consensus CUGGCCGCCGGAGCCGUUAGCAAGAACCGCUCUACGCCGCUAUCAGCAGUGGCCAGUAACAAACGUGGCUGCGCCACACGCAAGGAGAAUU ........((..((((.((((.................)))).)))).(((((((((.((....)).)))).))))).))........... (-23.70 = -23.40 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006