Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,630,513 – 7,630,614 |
Length | 101 |
Max. P | 0.610599 |
Location | 7,630,513 – 7,630,614 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 76.94 |
Mean single sequence MFE | -17.39 |
Consensus MFE | -12.83 |
Energy contribution | -12.71 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.26 |
Structure conservation index | 0.74 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7630513 101 + 20766785 AGGGUAAGGGGCGGGUACGGGUGGUACGGAAAGCGGAGCGAGGGCCAUAACAAUGAGG-AAAAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG .........(((..((((.....)))).....((...))....)))....(((((((.-.....((((((....))))))...........))))))).... ( -22.53) >DroSec_CAF1 75482 83 + 1 AGGG-----G--------GGGGGUUACGGAAAG-----CGAGGGCCAUAACAAUGAGG-AAAAUUGUGCAAACAUGCGCACAAAAUAAAAACACAUUGAUUG ....-----.--------..((.(..((.....-----))..).))....(((((.(.-....((((((........))))))........).))))).... ( -14.02) >DroEre_CAF1 78464 83 + 1 UGGA-----G--------GGAG---GCGGAAAGC--AGCGAGGGACACAACAAUGAGA-AAUAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG ....-----.--------.(..---((.....))--..)........((((((((((.-.....((((((....)))))).....(....)))))))).))) ( -16.10) >DroYak_CAF1 78408 83 + 1 UGGG-----G--------GGAG---ACGGAAAGC--AGCGAGGGCCAUAACAAUGAGG-GAAAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG ....-----.--------(...---.).......--.((....)).....(((((((.-.....((((((....))))))...........))))))).... ( -15.93) >DroAna_CAF1 74293 82 + 1 --GG-----G--------AAAG---CGGGAAACC--AAUGCCACCAAUAACGAUGAGGGAAAAUUGUGCAAACAUGCGCAUAAAAUGAAAAUUCAUUGAUUG --((-----.--------...(---(((....))--...))..)).....(((((((.......((((((....))))))...........))))))).... ( -18.37) >consensus AGGG_____G________GGAG___ACGGAAAGC__AGCGAGGGCCAUAACAAUGAGG_AAAAUUGUGCAAACAUGCGCAUAAAAUGAAAACUCAUUGAUUG ..................................................(((((((.......((((((....))))))...........))))))).... (-12.83 = -12.71 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:07 2006