Locus 2022

Sequence ID 2R_DroMel_CAF1
Location 7,628,624 – 7,628,724
Length 100
Max. P 0.580573
window3346

overview

Window 6

Location 7,628,624 – 7,628,724
Length 100
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -26.45
Consensus MFE -14.57
Energy contribution -15.45
Covariance contribution 0.88
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.55
SVM decision value 0.09
SVM RNA-class probability 0.580573
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 7628624 100 - 20766785
CAUCCCAUC-CC--CUUUAUCGAAUGCUCCUGCAUUUGAGCCUCAAGUCUACAACUUGGCC------CCAUGACCCGUGGGCCAUGGCUAAUUAGGAUGACAACUCCCA
.....((((-(.--.....((((((((....))))))))(((..((((.....))))((((------(.(((...))))))))..)))......))))).......... ( -31.70)
>DroSec_CAF1 73626 101 - 1
CAUCCCAUU-CCCUCUUUAUCGAAUGCUCCUGCAUUUGUGCCUCAAGUCUACAACCUGGC-------CCAUGACCCGUGGGCCAUGGCUAAUUAGGAGGACAACCCCCA
.........-.((((((...(((((((....))))))).(((....(....)....((((-------(((((...))))))))).))).....)))))).......... ( -31.90)
>DroEre_CAF1 76545 107 - 1
UUUCCCAGCCCC--CUUAAUUAAACGUUCCUGCAUUUGAGUCUCAAGUCUACAACCUGGCCCAUGACCCAUGGCCCAUGGCCCAUGGCUAAUUAGGAGGACGACCCCCA
............--..........(((.(((.((((((.....)))))........(((((.(((..(((((...)))))..))))))))....).))))))....... ( -23.60)
>DroYak_CAF1 76471 106 - 1
UCGCCCAUU-CC--CUUAAUUAAACGUUCCUGCAUUCGAGUCUCAAGUCUACAACCUGGCCGAUGGCCCAUAACCCAUAGCCCAUGGCUAAUUAGGAGGACGACCCCAA
.........-..--..........(((.(((.(........................((((...)))).........(((((...)))))....).))))))....... ( -18.60)
>consensus
CAUCCCAUC_CC__CUUAAUCAAACGCUCCUGCAUUUGAGCCUCAAGUCUACAACCUGGCC______CCAUGACCCAUGGCCCAUGGCUAAUUAGGAGGACAACCCCCA
...................((((((((....)))))))).......((((.(....(((((......((((.....)))).....))))).....).))))........ (-14.57 = -15.45 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:06 2006