Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,611,163 – 7,611,265 |
Length | 102 |
Max. P | 0.528895 |
Location | 7,611,163 – 7,611,265 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -25.23 |
Energy contribution | -25.68 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.75 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7611163 102 + 20766785 GUGGCUCAAAUUGCAACUAACCGGUGGGUGGAAGUGAGCUCGAAGUGGGAGUGGAAGC------GAGUCUGGUUUGGUUCUAGUUC------UGGUUCUUCUUUCAUUUCUGGU ..((((((..(..(.(((....)))..)..)...)))))).((((((..((.((((.(------(((.((((.......)))))))------.).)))).))..)))))).... ( -31.90) >DroSec_CAF1 56442 102 + 1 GUGGCUCAAAUUGCAACUAACCGGUGGGUGGCAGUGAGCUCGAAAUGGAAGUGGCAGU------GGGUCUGGUUUGGUUCUAGUUC------UGGUUCUUCUUCCUUUUCUGGU ..((((((...(((.....(((....))).))).)))))).((((.(((((.((.(.(------((..((((.......))))..)------)).).)).))))).)))).... ( -30.10) >DroYak_CAF1 58675 109 + 1 GUGGCUCAAAUUGCAACUAACCGGUGGGUGCAAGUGAGCUGGAAGUGGAAGUGGAAGUGGGAGU-----UGGUUUGGUUCUAGUUCUGGUUCUGGUUCUUCUUCCAUUUCUGGU ..((((((..(((((.(((.....))).))))).))))))(((((((((((.((((.(.((((.-----.((.(((....)))..))..)))).))))).)))))))))))... ( -38.90) >consensus GUGGCUCAAAUUGCAACUAACCGGUGGGUGGAAGUGAGCUCGAAGUGGAAGUGGAAGU______G_GUCUGGUUUGGUUCUAGUUC______UGGUUCUUCUUCCAUUUCUGGU ..((((((..((((.(((....)))..))))...)))))).((((((((((.((((.(..........((((.......))))..........).)))).)))))))))).... (-25.23 = -25.68 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:05 2006