| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,468,531 – 1,468,622 |
| Length | 91 |
| Max. P | 0.712192 |
| Location | 1,468,531 – 1,468,622 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 85.71 |
| Mean single sequence MFE | -26.59 |
| Consensus MFE | -20.75 |
| Energy contribution | -20.56 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1468531 91 + 20766785 CCAAUUG-UUUGAUUACAAGACAACUUUAAGUGUAGUU------UGGCUCUACUCUUUCCAUCUGCCCCGCUGCGCUGUUCGCAUGCAAAUGCGGGCA ....(((-(((.......)))))).....((((((((.------.(((................)))..))))))))((((((((....)))))))). ( -28.09) >DroSim_CAF1 633 93 + 1 CCAAUUGGUUUGCUUACAAGACGACUUUGAGUGUAGUUUU----UGGCUCUACUCCUUCCAACUGC-CCGCUGCGCUGUUCGCAUGCAAAUGCGGGCA ....((((((((....))))........(((((.(((...----..))).)))))...))))..((-((((((((.((....))))))...)))))). ( -25.70) >DroEre_CAF1 870 96 + 1 CCAAUUG-UUUAAUUAGAAUGCGACUUCGAGUGUAGUCCUCCACUGGCUCUACUCCUUCCAUCUGCC-CGCUGCGCUGUUCGCAUGCAAAUGCGGGCA .......-.......(((.((.((....(((((.((.((......)))).)))))..)))))))(((-(((((((.((....))))))...)))))). ( -27.10) >DroYak_CAF1 769 97 + 1 CCAAUUG-UUUAAUUGGAAUGAGACUUUUAGUGUAGUCCUCUACUGGCUCUACUCCUUCCAUCUGCCCCGCUGCGCUGUUCGCAUGCAAAUGCGGACA ((((((.-...))))))............((((((((........(((................)))..))))))))((((((((....)))))))). ( -25.49) >consensus CCAAUUG_UUUAAUUACAAGACGACUUUGAGUGUAGUCCU____UGGCUCUACUCCUUCCAUCUGCCCCGCUGCGCUGUUCGCAUGCAAAUGCGGGCA .............................((((((((.......(((...........)))........))))))))((((((((....)))))))). (-20.75 = -20.56 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:21 2006