Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 7,591,820 – 7,591,940 |
Length | 120 |
Max. P | 0.957303 |
Location | 7,591,820 – 7,591,940 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.65 |
Mean single sequence MFE | -34.95 |
Consensus MFE | -33.75 |
Energy contribution | -34.00 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.97 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7591820 120 + 20766785 CACACAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCUCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG ....(((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))) ( -35.90) >DroSim_CAF1 38321 118 + 1 --CACAUGACCUGAGGGGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCAAGGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCUCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG --..(((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))) ( -35.90) >DroEre_CAF1 36860 117 + 1 --CACAUGACCUGAGGAGCAUUGCGGUUGAGCUGCUUGGAAGUUUAAUUGAGCA-GGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCCUCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG --..(((((.....((.((.((((.((((((((.......))))))))...)))-))).)).........(((((((((..((((((.....)))))).....)))))))))...))))) ( -33.40) >DroYak_CAF1 38144 117 + 1 --CACAUGACCUGAGGAGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCA-GGCGCCGGCAAACAGGAUGUUGAAAUAGAGCCCUCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG --..(((((.(((.((.((..((((((((((((.......))))))))))))..-.)).))......)))(((((((((..((((((.....)))))).....)))))))))...))))) ( -34.60) >consensus __CACAUGACCUGAGGAGCAUUUCGGUUGAGCUGCUUAGAAGUUUAAUUGAGCA_GGCGCCAGCAAACAGGAUGUUGAAAUAGAGCCCCCAAGGCUUUUAAUAUUUAAUAUCGAAUCAUG ....(((((.....((.((..((((((((((((.......))))))))))))....)).)).........(((((((((..((((((.....)))))).....)))))))))...))))) (-33.75 = -34.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:58 2006