| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 7,571,555 – 7,571,669 |
| Length | 114 |
| Max. P | 0.924230 |
| Location | 7,571,555 – 7,571,669 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 91.10 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -21.24 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 7571555 114 + 20766785 GUCUCCUUCUUUUUUUUUUGGUCUCUAUAAACUUCGUUUUCUAUGUGGCUUUAAGGUCAAGCAAUUUCAGCAAUUGCAAAACUUUUUUAAAUCAAAGCCAAAACAAAGGCCAAA ................((((((((..........(((.....)))((((((((((((...((((((.....))))))...)))))........)))))))......)))))))) ( -20.50) >DroSec_CAF1 17601 109 + 1 GUCUCCU-----AUUUUUUGGUCACGAGAAAUUUCGUUUUCUCUGUUGCUUUAAGGUCAAGCAAUUUUAGAAAUUGCAAAACUUUUUUAAAUCAAAGCCAAAACAAAGGCCAAA .......-----....(((((((..((((((......))))))((((((((((((((...((((((.....))))))...)))))........)))))...))))..))))))) ( -23.80) >DroSim_CAF1 18116 109 + 1 GUCUCCU-----AUUUUUUGGUCACGAGAAAUUUCGUUUUCUAUGUGGCUUUAAAGUCAAGCAAUUUUAGAAAUUGCAAAACUUUUUUAAAUCAAAGCCAAAACAAAGGCCAAA .......-----....(((((((((((((((......))))).)))(((((((((((...((((((.....))))))...)))))........))))))........))))))) ( -24.90) >consensus GUCUCCU_____AUUUUUUGGUCACGAGAAAUUUCGUUUUCUAUGUGGCUUUAAGGUCAAGCAAUUUUAGAAAUUGCAAAACUUUUUUAAAUCAAAGCCAAAACAAAGGCCAAA ................(((((((..((((((......))))))..((((((((((((...((((((.....))))))...)))))........))))))).......))))))) (-21.24 = -21.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:51 2006